BAC Information

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BAC

Clone NameMSMg01-123J15
Chromosome6 (Build37)
Map Location 107,744,648 - 107,744,820
singlet/doubletsinglet
Overlap genenone
Upstream geneCrbn, Ppia-ps6_1128.1, Lrrn1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123J15.T7 (MSMg01no123_j15.b1)MSMg01-123J15.TJ (MSMg01no123_j15.g1)
ACCAG333165AG333166
length1,2511,282
length of high quality
(start - end)
173 (96 - 268)280 (128 - 407)
definitionCHROMAT_FILE: MSMg01no123_j15.b1 PHD_FILE: MSMg01no123_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:33 2005CHROMAT_FILE: MSMg01no123_j15.g1 PHD_FILE: MSMg01no123_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCATCACTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTCCTTTGTGAATAAAATGCATTACCAAGAGGCAAACCTTAGACAGAAA
CAATTATTTCTCATGCTCTGCCAGATTTTAACATGTGATATATGCTCGCA
TATATCTGTAGCATAAAGACGTGTGTGTGGGCCAGTTCAACCTTGATAAT
ATTCATCAGCTGACTTAGTAGGGAAAGAGGATGTGCTTAGTGTCATACAT
AATTGTGATGCTCTTCAGGGAAGAAGGGGTGAATAATGGCTTGATAAAGC
GCATTATCTTAGTATCTGCAACGGGAGGCACTGTTGAGGAGCATGACTTT
CTGTGCGATGCTCTCTGACCATTTTCCAGTCTACTCCGTCATTATAGGTA
AATGTTTTTTCTCGGCTATTTTACGGAGATGAACTTTTACAGTTTGTACT
CTGAGTTTTTTTTTTCCCCCCCCCTTAAATCCCCACCCCCCCCACAAAAA
AAAAGGGGTGTTTGGCCACAGGTCACAACTGTTCTGACAAATCATTATCC
TCGTTTCTTACCGCATATCTGATTGTTGATCTCATCAAGTTAGATCCTTC
ATCTGCTTCTTGTCCCACCCTCCTTACTTTGTCCAACACTCTCTCTCCCT
TGCTGTTCTGCTCAGCCCCTCCCTTCCTCTCATTTCGTTTTCCCATTCTG
ATTGTTTAGCTTCTTCCCCTCTTCCTCCCTTCCTTTCACTTCTCTCTCTT
CTTCTCTCCACCTCTCTATTACCCCCTTCTATCTTCATCCTCTCCTCCTC
CCTTATCTCACTCTTTTTTCTTCTTCATCTCTTTTCCCTCCTCTACCCTT
ACTTCTCTCCTTTCTCCTTCCCCTCTTCCTTTTCTCCTTCTCTCTTCTCC
TTTCTCCTACCTCTTACTCTCTCTTTCTTCTCTCTTTTCCTCTCCCCCTC
ACTCCTCTCTTCTCTTCTCCTTTCCTTTCCTCCCTCCATTCCCTTTCCTT
CTCTTTTTACCCTTTCCTTTCCTCTTCCTTCTCTCCATCCTCCCTCCTTT
TCTCCTTACTCCTCCTTCTCTCTTTCCACCTTCTGTCTCCTCACCCCTCT
CTTTTCTATTCTCACTCCTCTCTCTCCTCCCCTTTCTTCTCTCACTTATC
TCCTCTTCTTCTCCTTACTCTCCTCGCTACTTACTCTCTTCCTCTATTCC
TCTCTTCTTCCTACTCCCTCCCCTATTCCTCATCCTCCTTCCTTTCACTC
C
ATTTCCNTTATGCATGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTAAACCACCTCAGAGGNACTCAGAA
TGGTCCAAGGACCCCTTTAAATGCCTCTTTAATCAATACAAATGACTGTA
GAGAGGGACCTAGTTTTAATTGGCTTGAAAGCTTTCTCCTCTCACTGATT
TGAAAAAAAAAAAAAAAAGAAGTGAGATGTGTCCATTTATGTTGCGCTCA
CCTCGTCCGGCTAGGAAAAAACGCAACACGGTCGGATTCTTCTCAACAGC
TTTATTTCAGGAACACCTCGATGCTACAGGAACTCCGGGAACCCAAGGAG
GACTGCTTATATACACCCCAGCACTGGGGAGGGCTATGTGTCCTCCTGGG
ATTGGTTTTTCTGCCGGCACTTTAATTTGTATGCACCTGCTCAGGAGGGG
TTGGCGCCTTATTCTCCCTACCACCTGCGCAGTGGCGTTGTTTACAAAAA
CGGTGTACCGGAGGCCGGCCCCATCTTTTAGGCGCCCGGCTGCCTCCACT
TTTACAACACGGGAATGCAGCTGATATCCCTGAAAGCAGAAAGACTGAAG
GCTCCTGGGTCTAACCACTCGGTATGCTAAGATACAAAGCAAGCACTATT
TCTCACTGTTCTGCTCTGTGACAATAAATGTCCTTCCTGCTTAAGCCCCT
TGAAGTTGCAATTCTGTTCACCTCAATCTTATCTGAATGTGTGTCGTAAC
AGCCTATATTACTACTCTAAAAAACCCCTACCCCTGTATTAACTCTTTTT
ATCCGTGCTACCACATCCAATAACTGTGTCTTTGTTGGTTCCCTCTTGAT
TATCTTGCTTTGTCCCCTTTCCATGCACCCTGATTTCAATTTAGGCATCC
TTTCCCTTAACTCGTTCAATATTCGCAACACAATCCGACCCCATTTTCCT
ACAAATGGACAATCTTCTTAACATAAGGTCAAAATATCTTCTCATATTCA
TTAAACTCCTATCTCTTTTTAAGTCCCAAATGCCTTAATATCCTTTCCTC
CTAGGAATTTATTTTTATTTCTCTACATTCAACATCTTTATATTATGTAA
ATTTCTTTCCTACTATTTATGTCATAAAAATCTTCTCTTTCTCTTATTTT
TATTTACTAAAACACAACATTTCCTGGCTTCTTATACTGTTCCTCTTCAA
TAATTTCCCTCCTCACCTCCTTTTAAACAATTGTTCTATAAACTACTCTC
TCCCTCCTACATCAATTATAGATTACGTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_j15.b1 MSMg01no123_j15.b1 CHROMAT_FILE:
MSMg01no123_j15.b1 PHD_FILE: MSMg01no123_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:33 2005
         (173 letters)



>mm_chr6_107744448_107745020
          Length = 573

 Score =  319 bits (165), Expect = 5e-92
 Identities = 171/173 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaacaattatttctcatgctctgccagattttaacatgtgatatatgctcgcatatat 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 373 agaaacaattatttctcaggctctgccagattttaacatgtgatatatgcttgcatatat 314

                                                                       
Query: 61  ctgtagcataaagacgtgtgtgtgggccagttcaaccttgataatattcatcagctgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctgtagcataaagacgtgtgtgtgggccagttcaaccttgataatattcatcagctgact 254

                                                                
Query: 121 tagtagggaaagaggatgtgcttagtgtcatacataattgtgatgctcttcag 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tagtagggaaagaggatgtgcttagtgtcatacataattgtgatgctcttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)