Query= MSMg01no125_l04.b1 MSMg01no125_l04.b1 CHROMAT_FILE:
MSMg01no125_l04.b1 PHD_FILE: MSMg01no125_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:49 2005
(572 letters)
>mm_chr6_139055039_139056010
Length = 972
Score = 967 bits (500), Expect = 0.0
Identities = 552/570 (96%), Gaps = 2/570 (0%)
Strand = Plus / Minus
Query: 5 tgaga--agagacctgaacacaggtaagtagaaattaaaataagccttttccaaacacgc 62
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tgagaagagagaactgaagacaggtaagtagaaattaaaataagccttttccaaacacgc 720
Query: 63 ctccatgcttgagtcctcaggagccatagctgacccaggagtatgctcttgcatcagcta 122
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 719 ctccatgcttgagtcctcaggagccatagctggcccaggagtgtgctcttgcatcagcta 660
Query: 123 gatatgactcagacaattacatcagctgagcttcagccaactgcatgaagtcaactgatc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gatatgactcagacaattacatcagctgagcttcagccaactgcatgaagtcaactgatc 600
Query: 183 aaagcatgcccaaaggaggaaaagacagaccaatgatcaatcatgtgtttctgtgcctca 242
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 599 aaagcatgctcaaaggaggaaaagacagaccaatgatcaaccatgtgtttctgtgcctca 540
Query: 243 tttccgttttctgctcatcaggattacatgcctgcatgatggaatcaaactctccaaacc 302
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tttccgttttctgctcataaggattacatgcctgcatgatggaatcaaactctccaaacc 480
Query: 303 ttgtctgcttctggagttttcccctttcaaggatcatttattcaccaatcatcactgtaa 362
||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 479 ttgtctgcttctggagttttcccctttcaaggatcatttattcaccaattgtctccgtaa 420
Query: 363 aatttaatttttgtacatttttttccttatgaaaggaagaaaaggattttcacgtagcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aatttaatttttgtacatttttttccttatgaaaggaagaaaaggattttcacgtagcct 360
Query: 423 gatctgagaaacattgataataaaagacaagttgaagtatgtcagtaatagagaaaatta 482
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 359 gatctgagaaacgttgataataaaagacaagttgaattatgtcagcaatagagaaaatta 300
Query: 483 ctcttctttaaataataattatgaattaacaaattgagtacaattatgtcaaaataatac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctcttctttaaataataattatgaattaacaaattgagtacaattatgtcaaaataatac 240
Query: 543 tacatttttattaaatttataacgtcagaa 572
|| |||||||||||||||||||| ||||||
Sbjct: 239 tatatttttattaaatttataacatcagaa 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_l04.g1 MSMg01no125_l04.g1 CHROMAT_FILE:
MSMg01no125_l04.g1 PHD_FILE: MSMg01no125_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:49 2005
(463 letters)
>mm_chr6_138925936_138926798
Length = 863
Score = 810 bits (419), Expect = 0.0
Identities = 452/463 (97%)
Strand = Plus / Plus
Query: 1 attcaccacagaggaatattaaaaggttgagaaacacttaaagaaatgtttaaaggcctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 attcaccacagaggaatattaaaaggttgagaaacacttaaagaaatgttcaaaggcctt 260
Query: 61 agtgattagggaaatggaaatcagaataaccctgagactccaccttacaacaatcaaaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 agtgattagggaaatggaaatcagaataaccctgagactccaccttacaacaatcagaat 320
Query: 121 ggctaagatcaaaacctcaggtgacagcacatgttggccgggatgtgcagaaagaggaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctaagatcaaaacctcaggtgacagcacatgttggccgggatgtgcagaaagaggaac 380
Query: 181 actcctccattgcttgtgggattgcaaactggtacaatcactctggaaatcaatctggag 240
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 actgctccattgcttgtgggattgcaaactgatacaatcactctggaaatcaatctggag 440
Query: 241 attcatcagaaaattgaaaatagatctacctcaggagtggtatagctggatcttcaggta 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcatcagaaaattggaaatagatctacctcaggagtggtatagctggatcttcaggta 500
Query: 301 gcaaaaactggaagaagctgaggaacagggtttctaggtatttttaattcattcaaatga 360
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaaaacgggaagaagctgaggaacagggtttctaggtatttttaattcattcaaatga 560
Query: 361 cattaaaactttcaacaaatgcgtaaataatatcttgcttgcaatgttgggtgtagggtt 420
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct: 561 cattaaaactttcaacaaatgggtaaataatatcttgcttgtaatgttgggtgtaaggtt 620
Query: 421 tttatctttattttagttgaattcaactaacatattacaagaa 463
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 tttatctttattttagttgaattcgactaacatattacaagaa 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
