BAC Information

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BAC

Clone NameMSMg01-125L21
Chromosome6 (Build37)
Map Location 105,009,352 - 105,009,903
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6
Downstream geneLOC384470, LOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125L21.T7 (MSMg01no125_l21.b1)MSMg01-125L21.TJ (MSMg01no125_l21.g1)
ACCAG334752AG334753
length729727
length of high quality
(start - end)
554 (73 - 626)248 (74 - 321)
definitionCHROMAT_FILE: MSMg01no125_l21.b1 PHD_FILE: MSMg01no125_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:53 2005CHROMAT_FILE: MSMg01no125_l21.g1 PHD_FILE: MSMg01no125_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAAGCGGCGGA
ATTCTAGGACTGTATCACGTTGGAGAGATGGAGTGGTTGAGAGCATAAAG
TTGGTGTTCCAGAGAAGCAGAGTTTTGCTTTCTGCACTTGTGCTGGGTGG
CCCAGCATACTGTTAACTACTGCCTGAGAAGTTCCACAGCCCTCTTCTCA
TTGTCAATGGGACACACATGGCCAAAATATAGACAAAACCTATGCTTTAA
AATTTATAGATTTATTGTTATTATATATTATTATTTTTTATGTGTATAGG
CATTTTATTTGTAGGTCTGTGTGTGAACTACCTGTATAGAATACCGTTGA
AGGACAGAAGAAGACATCAGACTCATATGGACTGGAGTTCCAGATAGTTG
TGAGTTACCTGGAGATTGCTAGGACCCAGACCCATGACCTCTCGAAGACT
TGGCAGTGCTCCTAACCACTAAGAAATCATTCTAGCCTTCAAAAATGTGT
TAAATAGGTGAACTCTGTGGCTGATAAACAAAATAAAAAACAAAATAAAG
CACAATATTTTGTTCCCCCCCCCCAAATCTACAAACTCAATAAAACCAAA
CTCTATGTTTTCTTGCCTATCAGTACTTTACCCTCATTAATATTTTAAGT
CTCTAGTTCACTGAAATAAAATTACACTCTTTCGGGTATATGATGATATA
TGCTATGATCTGTGACTGCATATACTCAG
AATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCGAAATACCAGGCCAGTGTGACTCTAAATATAAAGGTG
AACAATGTATGAGGAATGTCATCTAAGTTGATCTCTGTCCTATACATATG
TAAACATATGTGTTTCTATGTATACTCAATCCTTCAGTGAAGATATTCAT
ATTAATATACACATATATGCATGCATATATATGTGCATACATGACTGACT
AAATACTTTCTTTTAAAATGAATTGAGTTTTCTCTTGCACTTTTGATTTC
TCTTGACTTTTGCCCACTGTCTTTTAATATGGATTCCATATTCTTCAGGG
AGCAGTATTAGAAAATACCTCATAGATTTCCCACTTTCCACAGCAATATA
CTGAATGAACACACATATTTTATAAAGCATCCAGTAATATGTAATCTACT
GCAGAAACAGCAGACTAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAAGAAG
GGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAATGGAAAA
AAAATAACAAAACACACTCACACACACAAAAAGAATAAACTAGCAGCTTG
ATAGCACACCTAAAACTTCTAGAACAAAGGAATCAAATACACCCAAAAGG
GGTAAAAGGCACGAAATAACCAACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_l21.b1 MSMg01no125_l21.b1 CHROMAT_FILE:
MSMg01no125_l21.b1 PHD_FILE: MSMg01no125_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:53 2005
         (554 letters)



>mm_chr6_105009152_105010103
          Length = 952

 Score =  998 bits (516), Expect = 0.0
 Identities = 544/554 (98%), Gaps = 2/554 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagagatggagtggttgagagcataaagttggtgttccagagaagcagagttttgctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagagatggagtggttgagagcataaagttggtgttccagagaagcagagttttgctttc 260

                                                                       
Query: 61  tgcacttgtgctgggtggcccagcatactgttaactactgcctgagaagttccacagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcacttgtgctgggtggcccagcatactgttaactactgcctgagaagttccacagccc 320

                                                                       
Query: 121 tcttctcattgtcaatgggacacacatggccaaaatatagacaaaacctatgctttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttctcattgtcaatgggacacacatggccaaaatatagacaaaacctatgctttaaaa 380

                                                                       
Query: 181 tttatagatttattgttattatatattattattttttatgtgtataggcattttatttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatagatttattgttattatatattattattttttatgtgtataggcattttatttgt 440

                                                                       
Query: 241 aggtctgtgtgtgaactacctgtatagaataccgttgaaggacagaagaagacatcagac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 aggtctgtgtgtgaactacctgtatagaataccgttgaaggacagaagaagacatcggac 500

                                                                       
Query: 301 tcatatggactggagttccagatagttgtgagttacctggagattgctaggacccagacc 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tcatatggactggagttccagatagttgtgagttacctggagattgataggacccagacc 560

                                                                       
Query: 361 catgacctctcgaagacttggcagtgctcctaaccactaagaaatcattctagccttcaa 420
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgacctctggaagacttgccagtgctcctaaccactaagaaatcattctagccttcaa 620

                                                                       
Query: 421 aaatgtgttaaataggtgaactctgtggctgataaacaaaataaaaaacaaaataaagca 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 aaatgtgttaaataggtgaactctgtggctgataaataaaataaaaaacaaaataaagca 680

                                                                       
Query: 481 caatattttgttccccccccccaaatctacaaactcaataaaaccaaactctatgttttc 540
           |||||||||||||| |||||  ||||||||||||||||||||||||||||||||| | ||
Sbjct: 681 caatattttgttccgccccc--aaatctacaaactcaataaaaccaaactctatgctatc 738

                         
Query: 541 ttgcctatcagtac 554
           ||||||||||||||
Sbjct: 739 ttgcctatcagtac 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 952
Length adjustment: 10
Effective length of query: 544
Effective length of database: 942
Effective search space:   512448
Effective search space used:   512448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)