BAC Information

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BAC

Clone NameMSMg01-126D08
Chromosome6 (Build37)
Map Location 110,386,561 - 110,386,905
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126D08.T7 (MSMg01no126_d08.b1)MSMg01-126D08.TJ (MSMg01no126_d08.g1)
ACCAG335089AG335090
length1,026681
length of high quality
(start - end)
---345 (75 - 419)
definitionCHROMAT_FILE: MSMg01no126_d08.b1 PHD_FILE: MSMg01no126_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:30 2005CHROMAT_FILE: MSMg01no126_d08.g1 PHD_FILE: MSMg01no126_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATATTTTTATTTTTTTTTAANTTTCTTCTTTATTCTCTATACCTTTC
CTTTTCTTACCTTTTTCCANTTCCCTTTTTCTAACNNTATAANNCCAACC
AATTTTCTATANCTACCTCTTTTCTTCTTTCCACCTTTTTCCCCTCCCCC
CCTTNTACCCCGCCACTCGCCCCGCCTTACCATCCTACTCTTTATCGTCT
CTCTCTACTACACACAATCTCTTCATCCACCTATCCATACACCTCTTTAC
TTACCTTACCTTAATCTTTCTCATTCCCCTTCTACTTCTTTCCGCCTTAT
TATACCACTGTTTCCTCCTCGTATTGATTATAGTGAGTAGCCCGATATAG
ACTGAGCTGAGAGCGAATAATATAATCTATTATAATACCACCTCTATTAA
TCACCATCCAAATAAATGAACCAACCCCAGACGCTAGACCAAAGATAACC
GTCCGTTCGTTACGACATCTCGACGGCTTCAGCTAACTCACTACTTACTA
TTTATATCTATCGCCTCCCTCTCTAATAATTTACCACCACATCTACATAA
CATATTCAACATACAATACACATATTAACTAAATACCACAATGAACATTA
ATAACAACCCTATACCACAATATACATACAACTAATATACCCTAAATATA
ATTATATACATAAATACATCTCCACATAGACATACAAATATATGCAGGAT
TATAACCACAGCTGGAGGGTGATGAAGACAGAGAACCGGATGGACGTGGG
AGAGGAGAGACGAGTGCGAGAGGAGGAGAGGAGGAGCGTGGGGATGGCGA
AGTATGGTGACGAAGATATCAGCACCGTATATTGTACAAGTGTGGACGCG
CTAGTGGCAGCCGCGAGAGTACCGAATGCGGCAGAGCCGATATCGAGCGT
GCGAGTAGAAGCGGGTGTATGGAGAGCGGCAGGTTGCGACGCGGTATGTG
CGAGAGAAGTATTGAGATGGGCAGGGTTAGAGAGCTGTGTTGACCGACGC
CCATATATAAAAGTGCGATAGTTGGT
NCATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACAGATAGTGAAAAACTGAAATGGA
AGAAGGGGTAGCACTTAATTAAAACTTATGGCATTTATAAATGAAGTAAG
AGTTATGAACTATAGATTACAAACAATATTACATGTTAATAAAACCATTG
TTTCCCATAAAAGTGTCTGCAGGTTTTAGCTAAGTGAATTATTAATATCT
TCATAGCAGGCTGTTATGTCTTATGTGGGAAATGACAGCTGGTTCCCCTT
TGATGAGCACATCTCCTTCTGAGAATTATGAGGTCTGTTTTAAAAGCTCC
CCATGTTTGACAGATTAAAACATTGGGAGTCTGAGGATTTATCTCATGTG
GCGTAGTGCTTTATTGCCAACTAAAGTTGTGTTGGTACGTCTAATAGAAC
CCCCATTTTCAGCCCTATACAGTTTCTTTCCCTTTTCAAGACTACATTGA
GTAATAAAACAGTGTGTTTTTTTTTATAACATCCATCCCCCCCCCTCTCT
CTCATTCTCTTCCCCTTCCCCACCGGAATTATGAGACGGTTTGATCCCAG
CCAGGATTGGTTTATTTATTAAGGCCATTGTCCAAATTAAATCTATTCTC
CCCTGACCAAAACTTTTCTCCTGGCCGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_d08.g1 MSMg01no126_d08.g1 CHROMAT_FILE:
MSMg01no126_d08.g1 PHD_FILE: MSMg01no126_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:30 2005
         (345 letters)



>mm_chr6_110386361_110387105
          Length = 745

 Score =  638 bits (330), Expect = 0.0
 Identities = 342/346 (98%), Gaps = 2/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagatagtgaaaaactgaaatggaagaaggggtag-cacttaattaaaacttatggca 59
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 201 aacagatagtgaaaaactgaaatggaagaagggg-aggcacttaattaaaacttatggca 259

                                                                       
Query: 60  tttataaatgaagtaagagttatgaactatagattacaaacaatattacatgttaataaa 119
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 tttataaatgaagtaagagttatgaactatagattacaaaaaatattacatgttaataaa 319

                                                                       
Query: 120 accattgtttcccataaaagtgtctgcaggttttagctaagtgaattattaatatcttca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 accattgtttcccataaaagtgtctgcaggttttagctaagtgaattattaatatcttca 379

                                                                       
Query: 180 tagcaggctgttatgtcttatgtgggaaatgacagctggttcccctttgatgagcacatc 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagcaggttgttatgtcttatgtgggaaatgacagctggttcccctttgatgagcacatc 439

                                                                       
Query: 240 tccttctgagaattatgaggtctgttttaaaagctccccatgtttgacagattaaaacat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccttctgagaattatgaggtctgttttaaaagctccccatgtttgacagattaaaacat 499

                                                         
Query: 300 tgggagtctgaggatttatctcatgtggcgtagtgctttattgcca 345
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgggagtctgaggatttatctcatgtggcgtagtgctttattgcca 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)