BAC Information

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BAC

Clone NameMSMg01-126G09
Chromosome6 (Build37)
Map Location 148,533,317 - 148,533,787
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
Downstream geneEG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126G09.T7 (MSMg01no126_g09.b1)MSMg01-126G09.TJ (MSMg01no126_g09.g1)
ACCAG335222AG335223
length703703
length of high quality
(start - end)
446 (45 - 490)471 (71 - 541)
definitionCHROMAT_FILE: MSMg01no126_g09.b1 PHD_FILE: MSMg01no126_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:46 2005CHROMAT_FILE: MSMg01no126_g09.g1 PHD_FILE: MSMg01no126_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGCTTACCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTA
TCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTT
TGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGA
GGTCCCACTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTTTTCCCCTGTGCCCATCTCTCCGAGGCTTTTCCACACTTT
CTCCTCTATAAGTTTCATTGCCTCTGGTTTTATGTGTAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATT
CTTCTTCATGATAACCGCCAGTTGTGCCAGTACCATTTGTCGAATTGCTG
TATTTTTCCACTGCATGGTTTTAGCTCCCTTCTCAAAAATCAAGTGGCCA
TAGGTGTGTGGTTTCATTTCTGGCTCTTCAATTCTATCCCACTGGTCTAC
TTGTCTGTTGCTATACCAGAACCATGCTAACCTTTATCATACTCGTTCTG
TCGTTTACCTTTAAGTTCCGCCTGTTGATCCCACCTCCGTTCCTCTTTTT
TTT
ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCACCCATGATGTGGTTTCTAAGAGCCTG
CAGCATGTACCTGCTTCTAAGAGCTCACAGCACAGCCAAGACTTATGTGC
CCCAGACTCAGATAGTTTTTAGAACTTGATTTCCAGTGTCTTGTTAAAAC
ATGCGGGAGCTATTACTAATTGCAGATAGTTATTCGAGGGTGACCAGAGT
CATGTATTCTCTCTCTCACCTTTCCTATTTTATCTAAAGCAGTCAGTATT
TCTGTGGCTGATCAATAACTTCTCCAACCTGGGATGAATAGAGTGTGCTA
ATCAATGGACCCCGGCATGACACAGAATGGTAAATGTGTCTGTTTTCAGG
TTGTGTGCACAGCTGTAATTAAAAGCTAAAGGGTAAAGGAGTCATTGTAT
TTTTATTAAAGTGAAAAATGAAGGGCGGCTTATGAATTGGCAACTGGTGA
AGGCACAAGCCTTCCACTTGTATACACCCCTAGGGTTCAGTGCAGGTCAG
AGTTACTTTCTGCTGTCAACTTGACACCAAGAGTCACCTGGGATGAGGGA
ACCTCAATTGAAAACTTGCTTCTATCATATTGGCCTGTGAGGCATTTTTG
TTTGTTGCTGTGTTACATGGTTAGCTGATGCCAGTCGGTCTGGATCTCTG
CGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_g09.g1 MSMg01no126_g09.g1 CHROMAT_FILE:
MSMg01no126_g09.g1 PHD_FILE: MSMg01no126_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:46 2005
         (471 letters)



>mm_chr6_148533117_148533987
          Length = 871

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacccatgatgtggtttctaagagcctgcagcatgtacctgcttctaagagctcacag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 671 ctcacccatgatgtggtttctaagagcctgcagcatgtacctgcttctaagaactcacag 612

                                                                       
Query: 61  cacagccaagacttatgtgccccagactcagatagtttttagaacttgatttccagtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacagccaagacttatgtgccccagactcagatagtttttagaacttgatttccagtgtc 552

                                                                       
Query: 121 ttgttaaaacatgcgggagctattactaattgcagatagttattcgagggtgaccagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttgttaaaacatgcgggagctattactaattgcagatagttattcgagggtgaccagagt 492

                                                                       
Query: 181 catgtattctctctctcacctttcctattttatctaaagcagtcagtatttctgtggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catgtattctctctctcacctttcctattttatctaaagcagtcagtatttctgtggctg 432

                                                                       
Query: 241 atcaataacttctccaacctgggatgaatagagtgtgctaatcaatggaccccggcatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atcaataacttctccaacctgggatgaatagagtgtgctaatcaatggaccccggcatga 372

                                                                       
Query: 301 cacagaatggtaaatgtgtctgttttcaggttgtgtgcacagctgtaattaaaagctaaa 360
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 371 cacagaatggtaaatgtgtctgttttcaggttgtgtggagagctgtaattaaaagctaaa 312

                                                                       
Query: 361 gggtaaaggagtcattgtatttttattaaagtgaaaaatgaagggcggcttatgaattgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gggtaaaggagtcattgtatttttattaaagtgaaaaatgaagggcggcttatgaattgg 252

                                                              
Query: 421 caactggtgaaggcacaagccttccacttgtatacacccctagggttcagt 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 caactggtgaaggcacaagccttccacttgtatacacccctagggttcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)