BAC Information

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BAC

Clone NameMSMg01-127H12
Chromosome6 (Build37)
Map Location 87,023,335 - 87,023,823
singlet/doubletsinglet
Overlap geneGfpt1
Upstream geneAdd2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1
Downstream geneD6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127H12.T7 (MSMg01no127_h12.b1)MSMg01-127H12.TJ (MSMg01no127_h12.g1)
ACCAG336001AG336002
length706714
length of high quality
(start - end)
---493 (76 - 568)
definitionCHROMAT_FILE: MSMg01no127_h12.b1 PHD_FILE: MSMg01no127_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:13 2005CHROMAT_FILE: MSMg01no127_h12.g1 PHD_FILE: MSMg01no127_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCAAATTGCGGCGCTAACACCACATATCCAAAACCGCGCAATACTTGGA
TTCCTGTTAACTACTGTTTCTTGAGTAGACAAATATGCTATAGTCCACTC
CCACCCACTCTGATCGTGTAATATAACCTGCCTTGTTCTCATCATGCCTG
CCACGTTATGTAATGACCATAGCTCTGATCCTTAGTACCATGCAAAATGT
TTGAAGCTTCTGCCCGCACTTCCTACATTCGTTACCTCGCCACATTCTTA
TATTTATCCCCAACTCTCACATACGAAAGCATTACGTACCGTACCAATAT
GCCCAACATCATCTTCTGACCTCCACACACTTACATTCACATGCGACCAT
GCCCTACTTACTTCACATATTTCCATTTATTAACATTTCCCCCCCTCCCC
TCTAATTTACCTTCACTTCCATAACCATCTGCTAGTACCCCTTCCGCCTT
TTACCCTTATCCTTCAACTTCTTTTTTCGCCATCACCTTTATCTACCCCT
ACACCACTCCTGGTTCTACTTGCTCAACATCCTGCCTTCATCCCACTAAC
TCTTTTTCATTCCCCGCTTTTCACCATTCCACCCACCGCATCCCGCCCTC
TTATACCCCATTTTTTTAAACACCACCTCCATTTTGTTTTCCACATCCCT
TCACCATCCCCTTTTTTTTTCACTTACCCTCCCTTTCCTGCCCCTATATT
TTTTCC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTACCCAGGACAGCCAGGGTT
ACACAGAGAAACCCTTAGGGAGAAAAAGGCTCTTGGGGTAAAAAATAAAT
ATTTTGTGTTGCAGCAAATAAAAAATTATTATCATCAACTTTGGAAATTG
ATCTTAAAGTAAGAGACCTACACAGGCCAGGGTTTAACCTGCCTCCTTAT
AAAGTAACTACAGCTAATGCAATTTATTAAGAGGCCAACATGTCCCAGTT
TCTTTACTGACAACCAACGTAAGTTCCTTTCACAGATTTCAGCTTTTAGA
GGTTACTAGAATAGGACTGACATGCAGATATCCTGATTTCAATCCAACAA
AACTGAAATGTGAAGGCCCCCCCTACTGCTACACCAGCGTGGTAACTTGT
GCCACAAGCAATAAGAATCAACCGCCGACACCGCTGGATCTCCTTAATGT
GATCTTTCAAACCTCCCAAATTCACTGAAATAGAAATGTGTGTATATAAT
TACTTACTAAAGATCGATATAAAACAGGTAATCACTTTTCATCAGTCTCC
ACTGTCGATGTGAAATATTAATAATACTGCTTCAAGTAATTCATATTTCT
CTTTGGAACTGTGCCCTCCCCCATCTGTACTCACCTCATCCATCCATTTA
GGTGTACAGACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_h12.g1 MSMg01no127_h12.g1 CHROMAT_FILE:
MSMg01no127_h12.g1 PHD_FILE: MSMg01no127_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:13 2005
         (493 letters)



>mm_chr6_87023095_87023986
          Length = 892

 Score =  839 bits (434), Expect = 0.0
 Identities = 476/490 (97%), Gaps = 1/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggttacccaggacagccagggttacacagagaaacccttagggagaaaaaggctcttg 60
           ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 729 caggtcacccaggacagccagggttacacagagaaacccttaggga-aaaaaagctctcg 671

                                                                       
Query: 61  gggtaaaaaataaatattttgtgttgcagcaaataaaaaattattatcatcaactttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gggtaaaaaataaatattttgtgttgcagcaaataaaaaattattatcatcaactttgga 611

                                                                       
Query: 121 aattgatcttaaagtaagagacctacacaggccagggtttaacctgcctccttataaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aattgatcttaaagtaagagacctacacaggccagggtttaacctgcctccttataaagt 551

                                                                       
Query: 181 aactacagctaatgcaatttattaagaggccaacatgtcccagtttctttactgacaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aactacagctaatgcaatttattaagaggccaacatgtcccagtttctttactgacaacc 491

                                                                       
Query: 241 aacgtaagttcctttcacagatttcagcttttagaggttactagaataggactgacatgc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aacgtaagtccctttcacagatttcagcttttagaggttactagaataggactgacatgc 431

                                                                       
Query: 301 agatatcctgatttcaatccaacaaaactgaaatgtgaaggccccccctactgctacacc 360
           ||||||||||||||||| |||||| ||||||||||||||||  || | |||||| |||||
Sbjct: 430 agatatcctgatttcaacccaacagaactgaaatgtgaaggggccacttactgccacacc 371

                                                                       
Query: 361 agcgtggtaacttgtgccacaagcaataagaatcaaccgccgacaccgctggatctcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agcgtggtaacttgtgccacaagcaataagaatcaaccgccgacaccgctggatctcctt 311

                                                                       
Query: 421 aatgtgatctttcaaacctcccaaattcactgaaatagaaatgtgtgtatataattactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aatgtgatctttcaaacctcccaaattcactgaaatagaaatgtgtgtatataattactt 251

                     
Query: 481 actaaagatc 490
           |  |||||||
Sbjct: 250 aggaaagatc 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space:   426006
Effective search space used:   426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)