BAC Information

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BAC

Clone NameMSMg01-127P22
Chromosome6 (Build37)
Map Location 64,600,175 - 64,764,638
singlet/doubletdoublet
Overlap geneGrid2, Atoh1
Upstream genenone
Downstream geneLOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127P22.T7 (MSMg01no127_p22.b1)MSMg01-127P22.TJ (MSMg01no127_p22.g1)
ACCAG336382AG336383
length712718
length of high quality
(start - end)
373 (47 - 419)342 (71 - 412)
definitionCHROMAT_FILE: MSMg01no127_p22.b1 PHD_FILE: MSMg01no127_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:56 2005CHROMAT_FILE: MSMg01no127_p22.g1 PHD_FILE: MSMg01no127_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,600,175 - 64,600,542)(64,764,297 - 64,764,638)
sequence
NTAATCATAATTTGCGGCGCTAAACGACTCCTATAGTTCGNAAATCCGCG
GAATTCACACACACACTTACACACACATACACACTTTATATCTAAACGTC
GAAACTCTCCTCTAGGTGTACTTTCAACTTCCACTTAAAAAAGTACTGTG
AAGATTTACACGAATTCATTTCGTTGTTTTTTTTTTTTAAAGAAAAAAGT
TTACAGTTTACTGACCTTACTCCAACTGCTCCTTATATAAAGTGTTTCTA
AATGATAAAGGGGTATGATGAGACTCCAATGGAGCTTCTAGAAGCATTTA
ATAGGAATGATGTGCAGAACTCCGGGCCTACAAGCCTTACTGTGTTCTAT
CCCGAGCCAGCCTGTATCCTACCTAGAATGTGGTGTGGCATGCTCAGAAT
GTGGCTGGCGTGTGACTGCACCCCCCTATGACTCAATTTCTCCATATATC
TTTGAAGCAAGGTTCTTGCTACGGCGCCACAGCCACCTGAGCTGTGTCGT
CGTGAGGTCTACCGAGTACAGAGACCTTTGTGGCTTCTCAGAACTTGAAG
GGCTTCCAGACAGGACACTCCACTCTCTCCTTACCCTGCGGTCTTCACTT
ACTTACACGAACTTAAAACTCCTCAACCAAAGCCTTCCCATGGACTGCAC
CCAACCCCATTAGAATTTCAATAGTTGAACTATAACTTGTATAGCTTGAC
ATTTGTTTCTAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGCAGTCTCTTTGTAAATGTTGGCTGC
ATCACAACTCCTAAGCTGCAGCACTAGCATAATGAGACTTTTAACCTTGT
ATTTCAGCAGGTTGGGCACTCAGGTAATAGACATTAAATAATCTGGTTGA
ATTTGCACCATTGAATCTAGAAAAAGAATGTGAGCAAAAGCTCTAGTATT
TGTGTGTACAGATTGAAAATCATCTAAGTATTGGTCTTCTAGTTGATGTT
TTCTGTGATAGCAAGTTATATTTACAAATTGGCAAATAAGAAAATGCATT
GGTTCACTTCAGCAATTCACAATTCTTACTTTATTTCTGTTAAGGTGTGT
CACTTTTGATGGGTTCCCCCCATGATCAAGAGAGGCTTTATTAGAAAATT
AGGAAAAGAAAGAGACCACACACCACCAAGACTTCCTTAAACTAACTGAA
TTGGAGAAACAGCAAATAAATGTTTCCAGAACGCTCACTAGGAAATACTT
CTAGGGAAAGGCTATCGGATACAGAGGTAATTTTGTAAATAAGATGGTGA
AGTTATTGACTCAAAGAATGAGCTAATACTCATCTACTAGGTTTTATTTA
GTTTCCATCGTCAATGGTAGTAGGGACTTATTTTCTTAGCTGTGCCTTAT
CTGTGAAAATTGTTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_p22.b1 MSMg01no127_p22.b1 CHROMAT_FILE:
MSMg01no127_p22.b1 PHD_FILE: MSMg01no127_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:56 2005
         (373 letters)



>mm_chr6_64599971_64600743
          Length = 773

 Score =  627 bits (324), Expect = 0.0
 Identities = 357/368 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacacacacacttacacacacatacacactttatatctaaacgtcgaaactctcc 64
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacacacacatacacacacacacacactttatatctaaacgtcgaaactctcc 264

                                                                       
Query: 65  tctaggtgtactttcaacttccacttaaaaaagtactgtgaagatttacacgaattcatt 124
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctaggtgtgctttcaagttccacttaaaaaagtactgtgaagatttacacgaattcatt 324

                                                                       
Query: 125 tcgttgttttttttttttaaagaaaaaagtttacagtttactgaccttactccaactgct 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 tcgttgttttttttttttaaagaaagaagtttacagtttactgaccttactccaactgct 384

                                                                       
Query: 185 ccttatataaagtgtttctaaatgataaaggggtatgatgagactccaatggagcttcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttatataaagtgtttctaaatgataaaggggtatgatgagactccaatggagcttcta 444

                                                                       
Query: 245 gaagcatttaataggaatgatgtgcagaactccgggcctacaagccttactgtgttctat 304
           ||||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||
Sbjct: 445 gaagcatttaataggaaggatgtgcagaattccgggtctacaagccttaccgtgttctat 504

                                                                       
Query: 305 cccgagccagcctgtatcctacctagaatgtggtgtggcatgctcagaatgtggctggcg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 cccgagccagcctgtatcctacctagaatgtggtgtggcatgctcagaatgtggctggtg 564

                   
Query: 365 tgtgactg 372
            |||||||
Sbjct: 565 ggtgactg 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no127_p22.g1 MSMg01no127_p22.g1 CHROMAT_FILE:
MSMg01no127_p22.g1 PHD_FILE: MSMg01no127_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:56 2005
         (342 letters)



>mm_chr6_64764097_64764838
          Length = 742

 Score =  615 bits (318), Expect = e-180
 Identities = 336/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggcagtctctttgtaaatgttggctgcatcacaactcctaagctgcagcactagcat 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||
Sbjct: 542 tctggcagtctctttgtaaatgttggatgcatcacaactcctaagctgcagttctagcat 483

                                                                       
Query: 61  aatgagacttttaaccttgtatttcagcaggttgggcactcaggtaatagacattaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aatgagacttttaaccttgtatttcagcaggttgggcactcaggtaatagacattaaata 423

                                                                       
Query: 121 atctggttgaatttgcaccattgaatctagaaaaagaatgtgagcaaaagctctagtatt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 422 atctggttgaatttgcaccattgaatatagaaaaagaatgtgagcaaaagctctagtatt 363

                                                                       
Query: 181 tgtgtgtacagattgaaaatcatctaagtattggtcttctagttgatgttttctgtgata 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgtgtgtgcagattgaaaatcatctaagtattggtcttctagttgatgttttctgtgata 303

                                                                       
Query: 241 gcaagttatatttacaaattggcaaataagaaaatgcattggttcacttcagcaattcac 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 302 gcaagttatatttacaaattggcaaataagaaaatgcattggttcatttcagcaattcac 243

                                                     
Query: 301 aattcttactttatttctgttaaggtgtgtcacttttgatgg 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aattcttactttatttctgttaaggtgtgtcacttttgatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)