BAC Information

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BAC

Clone NameMSMg01-128E09
Chromosome6 (Build37)
Map Location 89,104,303 - 89,104,589
singlet/doubletsinglet
Overlap genenone
Upstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965
Downstream geneLOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128E09.T7 (MSMg01no128_e09.b1)MSMg01-128E09.TJ (MSMg01no128_e09.g1)
ACCAG336590AG336591
length707704
length of high quality
(start - end)
---288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no128_e09.b1 PHD_FILE: MSMg01no128_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:18 2005CHROMAT_FILE: MSMg01no128_e09.g1 PHD_FILE: MSMg01no128_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTTT
GTAAGAT
CGATGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGTAATACGGCCTCAAGAAGTAACTT
GATAAACAACAGAAGTAAATCCCACTTTTCTTTGTTTGAGGGGAAATTTT
TCTCTGGAGGTTATTTATAAGAAAGTTTTGGAAATTAGCCCATAAAGCTG
TTTGTAGTTGGGATGTTTGAGGAATAGTAAGAAGCTATACATCTTAGTCT
TTGTCAACTTGATACAACCCAGAGTCACTTAGAAAAAGGAAACCTCAATT
GAGAAATTGGCCTGTAGGTTTGTCTGTGGGGCATTTTTTTGATTAATGAT
TGATGTAGGTGGGGTCAGCATACTGTGGGTGGTACCCTCCCTGGTCAGGT
GGTTTGGGTAATACCCCTTTTTGAGCTGGCTATGAAAAGCTTATCAGTCA
GCAACACCCCTCCATGGCCTCTGCATCAGTTCACGTCTCTAGGCTCACCC
TTGGATTCCTGCCCTAGCTTCCCTTTATGAAAGACTGTTTTGCATAAGAT
TATATAAATCTTTTTCTTCCCAAGTTGCTTTTAGTACAGCCTCTTACAAG
CATTATTTTGAAACTTTCTATTTGCTTTTTCTTTTACTTGCAAGTTGGTG
GCGCCTGCATCTCCTTTTTTTTACCACATATGCACACTTTTTATTATTTT
TCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_e09.g1 MSMg01no128_e09.g1 CHROMAT_FILE:
MSMg01no128_e09.g1 PHD_FILE: MSMg01no128_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:18 2005
         (288 letters)



>mm_chr6_89104103_89104790
          Length = 688

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtaatacggcctcaagaagtaacttgataaacaacagaagtaaatcccacttttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 caggtaatacggcctcaagaagtaacttgataaacaacagaagtaaatttcacttttctt 260

                                                                       
Query: 61  tgtttgaggggaaatttttctctggaggttatttataagaaagttttggaaattagccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttgaggggaaatttttctctggaggttatttataagaaagttttggaaattagccca 320

                                                                       
Query: 121 taaagctgtttgtagttgggatgtttgaggaatagtaagaagctatacatcttagtcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagctgtttgtagttgggatgtttgaggaatagtaagaagctatacatcttagtcttt 380

                                                                       
Query: 181 gtcaacttgatacaacccagagtcacttagaaaaaggaaacctcaattgagaaattggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaacttgatacaacccagagtcacttagaaaaaggaaacctcaattgagaaattggcc 440

                                                          
Query: 241 tgtaggtttgtctgtggggcatttttttgattaatgattgatgtagg 287
           ||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaggcatgtctgtggggcatttttttgattaatgattgatgtagg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)