BAC Information

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BAC

Clone NameMSMg01-128I20
Chromosome6 (Build37)
Map Location 68,639,063 - 68,639,626
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031
Downstream geneEG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128I20.T7 (MSMg01no128_i20.b1)MSMg01-128I20.TJ (MSMg01no128_i20.g1)
ACCAG336790AG336791
length718698
length of high quality
(start - end)		292 (66 - 357)545 (79 - 623)
definitionCHROMAT_FILE: MSMg01no128_i20.b1 PHD_FILE: MSMg01no128_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:41 2005CHROMAT_FILE: MSMg01no128_i20.g1 PHD_FILE: MSMg01no128_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGATTCTC
AATTGATAACCTTGAGTGCCCTAGAAGCACCTAAAGATATGGTTAACAGC
TTTAGTCATCATGTACCCCAAATCAAAACGACCCTGAGAATCCACCTCAC
ACCAATCAGAATGGCTAAGATCAAAAACTCAAGCAACAGCACATCCTGGT
GAGGATGTGGAGAAAGAGAATCATTTCTCCATTGCCAGTGGGATTGCAAG
CTGGCCAAACCACTTTGGAATTGATATGGTGGTTCCTCAGAAAACTGGAA
ATAGCTCACTGAAGACCCAGCAATACCTCTACTGGGGATATACCCAAATG
ATGCTCTATATATATAACACCTACACATGCTCCACTATGTTCATAGCAGT
CTTATGTATAACACCCAGAAGATAGAAACAACCTAGATGTCCCTAAACAG
AAGAATCAATACAGAAAATGTTGTACATTTACATAATGGCGTACTGTCTG
GCTATCAAAAACAATGACTATGAAATTTGCAGGCAAATGGATGAAACTAG
AAAATGTCATCCTGAGTGTAGTAATCCAGACACAAAAGACACACATGGTA
TGAACTCACTGATGAGTGGACATTAGACCTAAGGCTCAGAATACCACAAT
GCAACTCATATACTATATGATGCTTAACAAGAAGGAAGACCAAAGTGCTG
ATGCTTCACTCCTACTTA

NTCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTGAGTTTCTCCTGATGTTG
GCTCTAGGCTTCCTGTAATCTATCTTTATTGTGTTGACACATGTCCCTTG
TATTCGTACTATCACCAGGACTTGTATCATGAAAGATTGTTGGAATTTTG
TGAAAGATATTATTTAGTACATTTACTGAGCTGTTTATGTAAGCTTTTTT
CTTTTAGTTATTTAATATTGTAAATTATACTTTTCAAATTATATATACCA
AAACATCCCTATTATGTTACCTTAAATTCATCAAAATAATAATTATTTAT
AAGAAGTCTCATGTTATGAAGCAATCTGTTATAGAAATGCCTTCAAATAT
CATATTAACAAAATTGCCAGGAAATTGTTTGCACCAATATAAGATAGTCT
CTTTTCATTAACATAAATCATTTGTAAACATTGGCAAAATGGTTAGAATT
AAAAAACAGAATCTGAGTGAATAGTGTATAAGACAGGAGAAACTGTTCCC
TCTCCCTTTCTGAAAGAAAGTTTGGCAGTACATGAAGAAAAATTACTTGA
CTAATTCCAAGATTGATAGCCTAGAGGATTTGTTAATTAAAGTAAAATTA
ATATAACGATGAGAGCTATGATATTCACCACAGCAAGGGATCAAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_i20.g1 MSMg01no128_i20.g1 CHROMAT_FILE:
MSMg01no128_i20.g1 PHD_FILE: MSMg01no128_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:41 2005
         (545 letters)



>mm_chr6_68638883_68639828
          Length = 946

 Score =  671 bits (347), Expect = 0.0
 Identities = 504/569 (88%), Gaps = 31/569 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgagtttctcctgatgttggctctaggcttcctgtaatctatctttattgtgttgac 60
           |||||||||||||||||||||||||||||||||  |||||||||||||||||| || |||
Sbjct: 181 ctttgagtttctcctgatgttggctctaggcttgttgtaatctatctttattgggtagac 240

                                                                       
Query: 61  acatgtcccttgtattcgtactatcaccaggacttgtatcatgaaagattgttggaattt 120
           | ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atatgccccttgtgttcgtaatatcaccaggacttgtatcatgaaagattgttggaattt 300

                                                                       
Query: 121 tgtgaaagatattatttagtacatttactgagctgtttatgtaagctttttt-cttttag 179
           ||||||| || ||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 301 tgtgaaaaatcttacttagtacatttactgagatgtttatgtaagctttttttcttttag 360

                                                                       
Query: 180 ttatttaatattgtaaattatacttttcaaattatatataccaaaacatccctattatgt 239
           || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 361 tt-tttaatatggtaaattatacttatcaaattatatataccaaaacatccctattatgt 419

                                                                       
Query: 240 taccttaaattcatcaaaataataattatttataagaagtctcatgttatgaagcaatct 299
           ||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 420 taccttacattcaccaaaataataattattcataaaaagtctcatgttatgaagcaatct 479

                                                                       
Query: 300 gttatagaaatgccttcaa-atatcatattaacaaaattgccaggaaattgtttg----- 353
           ||||||||||||||||||| | ||||||| |||||||||  |||| |||||||||     
Sbjct: 480 gttatagaaatgccttcaaca-atcatataaacaaaattttcagggaattgtttgaggaa 538

                                                                       
Query: 354 --------------caccaatataa--gatagtctcttttcattaacataaatcatttgt 397
                         ||||||| |||  | ||||||||||||| ||||||||||||| |||
Sbjct: 539 atcattctcttatgcaccaatgtaactg-tagtctcttttcaataacataaatcatatgt 597

                                                                       
Query: 398 aaacattggcaaaatggttagaattaaaaaacagaa-tctgagtgaatagtgtataagac 456
           ||| |||||||||||||||||||| ||||||||||| | || ||||||||| ||||||||
Sbjct: 598 aaatattggcaaaatggttagaatgaaaaaacagaagt-tgggtgaatagtatataagac 656

                                                                       
Query: 457 aggag-aaactgttccctctccctttctgaaagaaa-gtttggcagtacatgaagaaaaa 514
           || || ||||||| |||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct: 657 ag-aggaaactgtcccctttccctttctgaaggaaaagtttggcagtacatgaagaaaaa 715

                                        
Query: 515 ttacttgactaattccaagattgatagcc 543
           ||||||||| |||||||||| ||||||||
Sbjct: 716 ttacttgacaaattccaagactgatagcc 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space:   500760
Effective search space used:   500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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