BAC Information

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BAC

Clone NameMSMg01-129C18
Chromosome6 (Build37)
Map Location 34,585,728 - 34,586,010
singlet/doubletsinglet
Overlap genenone
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
Downstream geneLOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129C18.T7 (MSMg01no129_c18.b1)MSMg01-129C18.TJ (MSMg01no129_c18.g1)
ACCAG337248AG337249
length687693
length of high quality
(start - end)
315 (43 - 357)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no129_c18.b1 PHD_FILE: MSMg01no129_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:30 2005CHROMAT_FILE: MSMg01no129_c18.g1 PHD_FILE: MSMg01no129_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCTGTCTGCGGCACCTACTGGCTCTTGATGGATTGTTTCCTTCAGCA
TCTGCAATGTCTTTTACTGTGAGCTCATCTCACGAGGGGCTGGAGTGTTC
CTCCGATGTTACCTTGTAGTTTGGATTGTAGAATGTCTCTCTGGAGTGTT
TTTATAACTGCTTTTGCCAGACATTCCAAAATATTATTAACCAGGGACCA
GTTTTTACATTAATTTCTCTGCTTGAAAGTTTCTAGGCTATTTCAGTAGA
GTAGGTTCTAAAACTAAATTTGTGTCAAGATCGGGCCCAGATTTTGAATC
CCCAGTTTTGGCTTTTCTTTTTGTGAATTTCCACACCATATTGTTGTGCT
ATTTGAGGCCATTTCCTTTCCTGGTCCACAGTGCCCTGACAGTGCAGGTC
TGCAAAGCTCTTCCTTTTTGAAGGGATCTCATTTCCTTTGTCAGTGCAGT
CTCAAGGTCCTGTAGTCACTAAAACTGAAGTTCCATGGGTTACGTAGATG
TGTGATCTGCTCCGTTTCCCAGTGGAAGGATCTGGTCATGCTTTTCCATG
CTTCCCTCGTCTCATCTCCTGTGGCTCCCCTTTCTTCCTCATCATCTCAG
TTCTGATTTAGCGTTTTGTTTCATTTTGCTTTGGATA
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCACACCCTGAAATTTTCCTCCA
TCCATTGGTATGGCCTGTTCCCCCCCCCAGGGGCAAAATCTTTGGGTGAT
ATTGCAAACAAATACAGAACCTCTTTCTAACCGGGCAACTCTGGGATCCT
GGTGTTGATGAGGGAATATCTGGTTTTTAAACGAGATTTCTAAAGGTACA
ATGTAGGCTATCAGAACACCTCAACCTTCATAGTGGCTCGGGGTAAAGGG
CGGGAGGGTGAGCTTGCTTCCCAGTGTATGAGATTTCTTTATCTGTGACA
TCTGGATATTCTCTCCAGCACACACGCGTTCATGTTTCTGCCAAGCAATC
TAGACTGGAAGCCTTTTGCTCAAAACAGAAAGATTAAATATGGGCTATTC
ACCTTTATGTTTTGTTTTTTCGCATTTCTCCCAGGTATCATTGCTCCCCC
TCCCCACCCCCACCCGTGGTTATGAGTCTATTGTTTGCATGTGGGTATCT
GGTTGCTTTGACGTAGTGTGCACGCACACAGAAGCCAGAGCAGGACATTG
GACATTTTCCTCTATCGCTCTCCACCTTATTCCTTTAAGCCAGGGTCTCT
CACTGGTTCAGAAGTTCTCCACATTGGCTAGGCTGGCCAGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_c18.g1 MSMg01no129_c18.g1 CHROMAT_FILE:
MSMg01no129_c18.g1 PHD_FILE: MSMg01no129_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:30 2005
         (286 letters)



>mm_chr6_34585528_34586213
          Length = 686

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcacaccctgaaattttcctccatccattggtatggcctgttcccccccccaggggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 483 agcacaccctgaaattttcctccatccattggtatggcctgttccccaccccaggggcaa 424

                                                                       
Query: 61  aatctttgggtgatattgcaaacaaatacagaacctctttctaaccgggcaactctggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatctttgggtgatattgcaaacaaatacagaacctctttctaaccgggcaactctggga 364

                                                                       
Query: 121 tcctggtgttgatgagggaatatctggtttttaaacgagatttctaaaggtacaatgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 363 tcctggtgttgatgagggaatatctggtttttaaacgagatttctaaaggtacaaggtag 304

                                                                       
Query: 181 gctatcagaacacctcaaccttcatagtggctcggggtaaagggcgggagggtgagcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gctatcagaacacctcaaccttcatagtggctcggggtaaagggcgggagggtgagcttg 244

                                                      
Query: 241 cttcccagtgtatgagatttctttatctgtgacatctggatat 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cttcccagtgtatgagatttctttatctgtgacatctggatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)