BAC Information

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BAC

Clone NameMSMg01-129M19
Chromosome6 (Build37)
Map Location 138,363,278 - 138,363,576
singlet/doubletsinglet
Overlap geneLmo3
Upstream genePtpro, Eps8, Strap, Dera, 9830102E05Rik, Mgst1
Downstream geneIgbp1b, EG668196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129M19.T7 (MSMg01no129_m19.b1)MSMg01-129M19.TJ (MSMg01no129_m19.g1)
ACCAG337715AG337716
length726729
length of high quality
(start - end)
611 (43 - 653)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no129_m19.b1 PHD_FILE: MSMg01no129_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:20 2005CHROMAT_FILE: MSMg01no129_m19.g1 PHD_FILE: MSMg01no129_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAA
TTCTCTTCAATGACCTCTTGTTTAGGCTACTTTAGGTAGGCGTGGGAGGG
TAGGGATTGTCACAGAAGCCTTCCATCTTCCTCTCAACTACGCCTCTGCA
TCCATTGATAGCACTGCAAACTATTCAGTGCTTCCTTGCTCTTTATATTC
ATCAGGAACATGGATTATGGTTTCCACATGGTTTCTGGAAGCACAGACCA
AGAATGGTGTGGTCCCTGACTGTAGTAGGCCCATGGACCTAGGCAAGGCT
CTTGAAACATCGCTGATCATATACATTACCATGGCCTCAGTGGGTGGTGC
AGGCTATTCACATCACTATGGAACTCAGTGGCAGCATGTCTCATGAACAT
TAATATGGCTTCACCCTGGAGCACAGACCAAGAATATTCATGTGGCCTTT
GGTGGTAACACAGCCATGGACATTGTTTTAGTGTCTCCATGCTGTGAAGT
GACACCATGACCAAGGCAACTCTTATAAAGGACAACATTTGATTGCAGCT
GGATTATTGGTTCTGAGGTTTAGTCCATTATCATAATGGCACGAAGCATG
ACAGCATCTAAGCAGGCATAATTCTGGAGGAGCTGAGAATTCCACATCTT
GTTCAGAAGGCAAGTAGGAGAAGACTGTCTTTCAGGCTATTAGGAGGAAG
CTCTCTCANAGCCTACCCACACAGTG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACTCAGCAGTCTTTGAACT
TTCCTTCTTTGAAATAAAAATGTCTCCTGTGCTCATTGTGAATGAGTGCC
TCGGTCCCAGATAAAGCGTTTGTGTTTGCTTTTCATGATCTGACGTGTTG
CTTCCCAGGTTCGCTTTGTCTGTGATAAGCAATACCCACATCCTTTTGAC
TTATATTATGCACAATTTTAGTATTTCAAGTTGATTTAGGTTTGCGGTTG
CAAACAAGGAGTTTATACAGGTCGGGCTGGAGTAGGTATTTTAATAAGTA
AAATAAATAAATATTTTTTAAGGAGAATGCAAAGAATGTGGCTTGATCGC
TTCAGATACTTTTTGACCCACAAATGTTGAGTTTACCTGTTTTTTTTTGT
TTTTTTTTTTTTGTGGGTAAAATAGTTTTGGGTTTTCAATGTGCGGCTGG
CAGAGAAAGTAACCTTGGGTTTGTTTTATTTTATTCTTCCTTGTGATAGC
AAATAGAATAGGTGTTAACCTAATGTCTGACCGTCTCGAGTAAATGCTTC
ATCCAAGGGAATTTATCGAAACAGTTTCCATTTCCGAAGTCGTCATCTTT
CCTTAATAACAAAATGCATGTTACTTTTTGAGATAAAACTTTTAATTTCT
GCTGGCCTTTAAGTTCGGTTAACTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_m19.g1 MSMg01no129_m19.g1 CHROMAT_FILE:
MSMg01no129_m19.g1 PHD_FILE: MSMg01no129_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:20 2005
         (290 letters)



>mm_chr6_138363200_138363889
          Length = 690

 Score =  520 bits (269), Expect = e-152
 Identities = 287/299 (95%), Gaps = 10/299 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcagaactcagcagtctttgaactttccttctttgaaataaaaatgtctcctgtgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttcagaactcagcagtctttgaactttccttctttgaaataaaaatgtctcctgtgctc 318

                                                                       
Query: 61  attgtgaatgagtgcctcggtcccagataaagcgtttgtgtttgcttttcatgatctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attgtgaatgagtgcctcggtcccagataaagcgtttgtgtttgcttttcatgatctgac 258

                                                                       
Query: 121 gtgttgcttcccaggttcgctttgtctgtgataagcaatacccacatccttttgact--- 177
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   
Sbjct: 257 gtgttgcttcccaggttcgctttgtctgtgctaagcaatacccacatccttttgactcct 198

                                                                       
Query: 178 -------tatattatgcacaattttagtatttcaagttgatttaggtttgcggttgcaaa 230
                  |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 197 tttgacttatattatgcacaattttagtatttcaagtggatttaggtttgcggttgcaaa 138

                                                                      
Query: 231 caaggagtttatacaggtcgggctggagtaggtattttaataagtaaaataaataaata 289
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 caaggagtttatacaggtcgggctggagtaggtattttaataagtaaaataaataaata 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)