BAC Information

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BAC

Clone NameMSMg01-130B16
Chromosome6 (Build37)
Map Location 19,316,731 - 19,317,377
singlet/doubletsinglet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130B16.T7 (MSMg01no130_b16.b1)MSMg01-130B16.TJ (MSMg01no130_b16.g1)
ACCAG337942AG337943
length721718
length of high quality
(start - end)
681 (41 - 721)653 (66 - 718)
definitionCHROMAT_FILE: MSMg01no130_b16.b1 PHD_FILE: MSMg01no130_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:45 2005CHROMAT_FILE: MSMg01no130_b16.g1 PHD_FILE: MSMg01no130_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCGCGGAATTCAT
CCTGATTGACGTAACCGAATCACAAAAGAAGTCACTTGATATGCACTCAC
TGATACGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATACAATTTG
CAAAACACAAGAAAATAAAGAAGGAAGACCAACGTGTGAATACTTCATTC
CTCCTTAGAATAGGGAACAAAATACCCATGGAAGGAATTACAGAGACAGA
TTTTAGAGCAGAGACTGAAGGAATGACCATCCAGAGACTACACCATCCAG
GAATCCATCCCATAATCACCCACCGAAAACAGACATTATTGCACATGCCA
GCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTTTTGTGAGTGCCT
GGCAAATACAGAAGTGGATGCTCACAGGCATCTATTGGATGGAACACAGG
ACCCCTAATGGAGGAGTTAGAGAAAGTATCCAAGGAGCTGAAGGGGTCTG
CAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCATAGCT
CATGTCTCTAACTGCATATGTAGCAAAACATGACCTAGTTGGCCATCATT
GGGAAGAGAGGACCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGG
GAATGCCAGGGCCAAGAAGTGGGAGTGGGTAGTTTGGGGAGCAGGGCAGG
GGGGAGGGTATAGGGGACTCT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTCAGAAATTCTCTTAGTTTTATAACTCTTAGCCGTGTACTGG
AACTGTCTGTTATTTGGATCACTTAGTAATGTTTAGGGGAAAAGAATCTA
TCCTTTTAGATGGGACTTTAAATGGGATTAATTTTAATCTACTTTATATG
GAACAAGGCAAGGGATTGAGCTTTAGCTCATGTGAGGCTTACCTTTGACA
TGTTAGCTACAATTTTTATATTTCTATCTTTTAAACAGATGTTAGTCTCT
TTATCTTTAAGTACTTCTAAAATTGCCCATAACTTAAGGATAACAGGTTG
CTTTTAGTCAACCATAAATTATTAGATGATATTAACAAATACCCATTTCT
AGCTGCTTATAGATTCAGGCCTAAGTTCCTTTTTAAGAATTATCTTTAAG
CTTTTTTTTTTACAGACCTCTTGTTTTGCCCTCCAACAGTTCCTCATTCC
ATTCTTTCTCCCCTGTCTCCAAGAGGATGTCCCCACATCCCCACATACCC
CAAAATCCTGCCAGGCCTCTCTATTCCCTGGGGCCTCAAGTCTCTCAAGA
ATTCAGTGCATCTTCTCTCACTGAGACTAGACCAGGCAGTCCTCTGCTGT
ACATATGTTGGGAAGCCTGGATTTTTACTTTTTATTTTATTTTTTATTAA
TCATTCCATTTGTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_b16.g1 MSMg01no130_b16.g1 CHROMAT_FILE:
MSMg01no130_b16.g1 PHD_FILE: MSMg01no130_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:45 2005
         (653 letters)



>mm_chr6_19316527_19317578
          Length = 1052

 Score = 1176 bits (608), Expect = 0.0
 Identities = 638/648 (98%), Gaps = 1/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   cttagttttataactcttagccgtgtactggaactgtctgttatttggatcacttagtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cttagttttataactcttagccgtgtactggaactgtctgttatttggatcacttagtaa 264

                                                                       
Query: 65  tgtttaggggaaaagaatctatccttttagatgggactttaaatgggattaattttaatc 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 tgtttaggggaaaagaatctatccttttaaatgggactttaaatgggattaattttaatc 324

                                                                       
Query: 125 tactttatatggaacaaggcaagggattgagctttagctcatgtgaggcttacctttgac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactttatatggaacaaggcaagggattgagctttagctcatgtgaggcttacctttgac 384

                                                                       
Query: 185 atgttagctacaatttttatatttctatcttttaaacagatgttagtctctttatcttta 244
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 atgttaggtacaatttttatatttctatcttttaaacagatgttagtctcgttatcttta 444

                                                                       
Query: 245 agtacttctaaaattgcccataacttaaggataacaggttgcttttagtcaaccataaat 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtacttcaaaaattgcccataacttaaggataacaggttgcttttagtcaaccataaat 504

                                                                       
Query: 305 tattagatgatattaacaaatacccatttctagctgcttatagattcaggcctaagttcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattagatgatattaacaaatacccatttctagctgcttatagattcaggcctaagttcc 564

                                                                       
Query: 365 tttttaagaattatctttaagcttttttttttacagacctcttgttttgccctccaacag 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 tttttaagaattatctttaagcttttttttt-acagacctcttgttttgccctccaacag 623

                                                                       
Query: 425 ttcctcattccattctttctcccctgtctccaagaggatgtccccacatccccacatacc 484
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 624 ttcctcattccattctttctcccctgtctccaagaggatgtccccacacccccacatacc 683

                                                                       
Query: 485 ccaaaatcctgccaggcctctctattccctggggcctcaagtctctcaagaattcagtgc 544
           || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 cccaaatcctgccaggcttctctattccctggggcctcaaatctctcaagaattcagtgc 743

                                                                       
Query: 545 atcttctctcactgagactagaccaggcagtcctctgctgtacatatgttgggaagcctg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atcttctctcactgagactagaccaggcagtcctctgctgtacatatgttgggaagcctg 803

                                                           
Query: 605 gatttttactttttattttattttttattaatcattccatttgtttac 652
           |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gatttttaatttttattttattttttattaatcattccatttgtttac 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space:   670006
Effective search space used:   670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)