Query= MSMg01no130_c24.b1 MSMg01no130_c24.b1 CHROMAT_FILE:
MSMg01no130_c24.b1 PHD_FILE: MSMg01no130_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:52 2005
(240 letters)
>mm_chr6_56882184_56882823
Length = 640
Score = 445 bits (230), Expect = e-129
Identities = 236/238 (99%)
Strand = Plus / Minus
Query: 1 gtgtgctgtacactctcatttttggaacagtgtaataactgcacaatggcagtttcagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtgtgctgtacactctcatttttggaacagtgtaataactgcacaatggcagtttcagat 379
Query: 61 taatgtttgacttgcaaagaaaattcgaagaaattatgtttagaagtaaactaagaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taatgtttgacttgcaaagaaaattcgaagaaattatgtttagaagtaaactaagaaaac 319
Query: 121 gaaacagagccaatattgggacccagagtaaagttatgaaatgagttttgcacatttgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaaacagagccaatattgggacccagagtaaagttatgaaatgagttttgcacatttgag 259
Query: 181 agtggtccctggtctccttgtaatatatatgtatatgcaagtaaagattagattcctg 238
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 258 agtggtccctggtctccttgggatatatatgtatatgcaagtaaagattagattcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_c24.g1 MSMg01no130_c24.g1 CHROMAT_FILE:
MSMg01no130_c24.g1 PHD_FILE: MSMg01no130_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:52 2005
(777 letters)
>mm_chr6_56812689_56813865
Length = 1177
Score = 1348 bits (697), Expect = 0.0
Identities = 747/779 (95%), Gaps = 28/779 (3%)
Strand = Plus / Plus
Query: 1 gaacatgctcactttgt-c-cttcctcttctgatttctattcacataaaatgtggatctt 58
||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacatgctcactttgttcac--cctcttctgatttctattcacataaaatgtggatctt 258
Query: 59 gggaatttttttcctggaggtttcctcagagaggatccaagacatatcaatcttattaga 118
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 259 gggaatttttttcctggaggtttcctcagagaggatccaagacacatcaatcttattaga 318
Query: 119 aactagagggtacaactgagaagcagcttgtcttctctgatttaaatttctggttttccg 178
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 319 aactagagggtacaactgagaagcagcttttcctctctgatttaaatttctggttttccg 378
Query: 179 gaccataaaagcttaaggagtatgagctggagccaggtgtggtaatgcatgctgtgatct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaccataaaagcttaaggagtatgagctggagccaggtgtggtaatgcatgctgtgatct 438
Query: 239 tagtactcggaggcagaggcagggggcggggggcaggggtccggggggcggggggcaggg 298
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tagtactcggaggcagaggcagggggcggggggcaggggtccggggggc----------- 487
Query: 299 gtccgtttttgcaggggtccggggggcaggaggcaggaagctatggagtttaaggccatc 358
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 488 ------------aggggtccggggg-caggaggcaggaagctatggagtttaaggccatc 534
Query: 359 ttccctgccatagttacgatctaatgctgtgataaggcagcaatgaccaaggcaactgta 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttccctgtcatagttacgatctaatgctgtgataaggcagcaatgaccaaggcaactgta 594
Query: 419 gaagagtttatttggggcttacagtttcagagggtttgtagtccatgatgacagtgcaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaagagtttatttggggcttacagtttcagagggtttgtagtccatgatgacagtgcaaa 654
Query: 479 ggcatgatgccatgaacagctaagagcttagatctgtaagtaggaggcactaagggctaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggcatgatgccatgaacagctaagagcttagatctgtaagtaggaggcactaagggctaa 714
Query: 539 ctaggaatgtcatgaacctttgagaccttaaagactgcctcttgtacatcttccaacaag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ctaggaatgtcatgaacctttgagaccttaaagactgcctcttgtacatcttccaacaag 774
Query: 599 gccatacctcctaatccatctcaaatactttcacccactggggaccaaatatttaaacca 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gccatacctcctaatccatctcaaatactttcacccactggggaccaaatatttaaacca 834
Query: 659 ttaaacttaactaagtagtaactttgaggccaacctgggctacatgagaccctctcctaa 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ttaaacttaactaagtagtaactttgaggccaacctgggctacatgagaccctctcctaa 894
Query: 719 aaaagaaaggagagagaaaccaatgtctagggagagaggaagaaagaggaggaggaaga 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 aaaagaaaggagagagaaaccaatgtctagggagagaggaagaaagaggaggaggaaga 953
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 777
Length of database: 1177
Length adjustment: 10
Effective length of query: 767
Effective length of database: 1167
Effective search space: 895089
Effective search space used: 895089
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
