Query= MSMg01no130_f05.b1 MSMg01no130_f05.b1 CHROMAT_FILE:
MSMg01no130_f05.b1 PHD_FILE: MSMg01no130_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:04 2005
(374 letters)
>mm_chr6_41410424_41411197
Length = 774
Score = 690 bits (357), Expect = 0.0
Identities = 369/373 (98%)
Strand = Plus / Minus
Query: 2 ctatctggtttgatctcaagttcatcattcattgacacccatggctaacagtgcttaaag 61
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctatctggtttgatctcaagctcatcattcattgacacccatggctaacagtgcttaaag 358
Query: 62 tgggtaggatggttgaaactattttagaaaaagtcccgggtatgtggagatttatgtacc 121
||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 357 tgggtaggatggttggaactattttagaaaaagtcctgggtatgcggagatttatgtacc 298
Query: 122 tacaagcttttataggtcaagtctgtatattaatgacaaatagagagtaggtcttatacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tacaagcttttataggtcaagtctgtatattaatgacaaatagagagtaggtcttatacc 238
Query: 182 ggagagaagaatgtaatgttattttatttatttaccttatttctttatttttatttctag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggagagaagaatgtaatgttattttatttatttaccttatttctttatttttatttctag 178
Query: 242 ataaaaattccccaatcacagcctctccctactcaattcttccctgaaaaatccctcccc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ataaaaattccccaatcacagcctctccctactcaattcttccctgaaaaatccctcccc 118
Query: 302 tttgccatgtgtccttcccctcagaaaaagggagctccccttgggtacctccctactggg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tttgccatgtgtccttcccctcagaaaaagggagctccccttgggtacctccctactggg 58
Query: 362 gcttcttgaccca 374
|||||||||||||
Sbjct: 57 gcttcttgaccca 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_f05.g1 MSMg01no130_f05.g1 CHROMAT_FILE:
MSMg01no130_f05.g1 PHD_FILE: MSMg01no130_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:04 2005
(632 letters)
>mm_chr6_41184940_41185971
Length = 1032
Score = 1085 bits (561), Expect = 0.0
Identities = 608/633 (96%), Gaps = 18/633 (2%)
Strand = Plus / Plus
Query: 1 cagaaaataataatgtggctttaacatgtccaggatcacaggtgagcacgccacaacatc 60
||||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||
Sbjct: 217 cagaaaataataatgtgtctttaacatgtccgggatcacaggtgaggaggccacaacatc 276
Query: 61 tgcctcaacacccatagtaactgtgtcccctcaggatgttgcacagcttatggtctgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgcctcaacacccatagtaactgtgtcccctcaggatgttgcacagcttatggtctgagc 336
Query: 121 ctgtgccctgagtagaccttaggtgctgggtctgcatgcagtcccacaacacccagagga 180
|||||||||||||||||||||| | || || |||||||||||||||
Sbjct: 337 ctgtgccctgagtagaccttag-t---------------agacc-acaacacccagagga 379
Query: 181 agctcgactcccagatgttctaacatgcctaggatcacagttgaggaggcaacacctata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agctcgactcccagatgttctaacatgcctaggatcacagttgaggaggcaacacctata 439
Query: 241 gtaactggatcccccaggatccaggggtgcaggaacccctgactagtcagtggcacaggt 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 gtaactggatcccccaggatccaggggtgcaggaacccctgactagccagtggcacaggt 499
Query: 301 tccttccagtctgaacttgcacctggagcagacctggggtgctggtactgtatccactct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tccttccagtctgaacttgcacctggagcagacctggggtgctggtactgtatccactct 559
Query: 361 taaaacacccagagggagtccaattccctggtgccctgaa-cacccaggatcacaggatc 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 560 taaaacacccagagggagtccaattccctggtgccctgaaacacccaggatcacaggatc 619
Query: 420 tcaggatcacagagcaagctcaactcccaggagatcagtcacatctaggagcactggagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcaggatcacagagcaagctcaactcccaggagatcagtcacatctaggagcactggagc 679
Query: 480 tatgacacactcaagatcacagctgaggccacaacatctggaacccccataggaaccagt 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 680 tatgacacactcaagatcacagctgaggccacaacatctgggacccccataggaaccagt 739
Query: 540 gatacataaacccccacccagccagaaacacgactttcttctagcttgcacctgtgccca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gatacataaacccccacccagccagaaacacgactttcttctagcttgcacctgtgccca 799
Query: 600 gggcaaacccagggctctggctccccacccacc 632
|||||||||||||||||||||||||||||||||
Sbjct: 800 gggcaaacccagggctctggctccccacccacc 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
