BAC Information

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BAC

Clone NameMSMg01-130K24
Chromosome6 (Build37)
Map Location 117,524,949 - 117,525,711
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130K24.T7 (MSMg01no130_k24.b1)MSMg01-130K24.TJ (MSMg01no130_k24.g1)
ACCAG338377AG338378
length9751,135
length of high quality
(start - end)
60 (43 - 102)797 (88 - 884)
definitionCHROMAT_FILE: MSMg01no130_k24.b1 PHD_FILE: MSMg01no130_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:36 2005CHROMAT_FILE: MSMg01no130_k24.g1 PHD_FILE: MSMg01no130_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGCAATACTAGCTCTCGCTGGTTCTCAGAAATCTGAGGGAGAGCTGA
GCNTGACTCTNTGAGTAGCAACATCACATCGTGGGTTTTNTTCCCNAGTG
TCCCAACAAGTGGGAAGAAGTCAATCCCATTGGGATGGGCATTCAGACAT
GGGTCTCCCAGCCAACTTCCTCTGAACAGCAGCATCGCGTCAAAACCACA
TCCTCANNCAACTTTTCCCCTTCCCGCCTGGCTATTGACACNNAGTAATA
CCAATGGGCAGTAAGCATCCAACCTCCCATGGCTTGGAAGATGCCNTCCN
NTCCGCACATTTGGGTTTTGCCAGCCCCCAGAAGAAANATGGATATTTTG
GGAAATTTTTGTTATTCTCAACCCGCCCCCGCCCTCCCAAAATGGGCTTT
GGATTGGAAATTTTAAAGAACCCTCTCCACACCCCCATGACAAACCAAAA
ATACAAACAGNNNGGGGGTTTGTTTATGCGNCTCTCCCCGTCTACTATCA
ATNNATCACACCCNNNNNCATTCTTCCACGGGACNAAACTTTCTTTTCCT
CGGGGCACTACCCTTCTAAGTGGCCACAACAAGAAAATTCTGGGGGTGCG
CTGCCCTCTCCTCGGGAGAGGNCCCAAGAGCGGGGGGGCGGTCCTCTCCA
CACCCCTCCCACAATACTAATCACACATGGANTNACAATAGTATATTTNN
NNNTTATCTTCCTTTNTTNNNCCCCACAAACNNNNAAAAACAAAATGAAG
AAGAAGACATCCGCTCCGTGTATTGGGCTNGNNNNNNNNNNNNNNNAAGT
TNTTNTNTNCNTTTCCCTCTACCTNTNCCCNNTNNNNCAAGGNNCNNNNN
NNNNAAGCCTCTCTATNNNNNNCTCTNCNCTTTCCTCCTTCCCCAATATA
AACCACCAAACATAAAAAAGAAGAG
NCCCGCTCTTTNNNNTACGATGGNAGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTTTCTCCCTTTCGAGGTT
CCGATGACAAAACCAACACACCTTTACCACTTTCTATCCTGGGGAACCGG
TAAGGTTTTGTTTTTTGTTTTTTTTTAAAGCATCCTCACACACACTGGTA
ATGGATTACTGATGGGAACTTGGGTGACTCCAAAACAGACGCACTGGGAA
GTCTTCAGCCAGAGATGATGGCTTCCTTCGAGCCATGTACATGGCGTGCC
CATCTCCTAGTCTTCCCGAGTCTATACACTCTAGCCCTTCCCTAAGCCCC
GTGCAGATAGGGCAGGGTTGCATACACGTGGCTTAGTGGAGTGGCTGGGC
ACTCAGGCGGGATTCCAGTGACCCTCCATACTCACTCCCAGGGGAGGATG
TCAGCAGCCAAGGGGCCAACTGTGAGGACTGTTCCCTCGCAGACACAGCT
GGTCTTAGGAAGATGGCTGCTCTCCTGGGAGGACAGTGCTGTGCAGCATC
CCTCATTGTGAGACACTGAAGAGTGTCCGGGGACAGCTGGCGCTGCTTCA
GAGAGTGTCACAAATCACAGCAGCCAGTTACTGTGCTCTGAACCTTCTGT
GCTGAAAGTGCCACATTTTAGGCCTGGGTTTGGCAGTACAAAGAATATGC
ATAACTCAGTAGCAATTCATTCATTCATTCATTCATTCATTCATTCATTC
ATTCATTCATTCATTCATAGTTTGGTTTCTCAAGTCATGATTTTTTTTTG
TTGTTTTTGTTTTTGTTGTTTTTGTTTTTGTTTTTTTTTTGTAGACCTGG
CTGTGCTGAAACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCTTC
TGCCTCTACCTGCCTAATGCAGGGGATTAAAGGGTGTACCACGCCCTGAA
TGGTCCCGATCTTTGGGGGGGGATTTTTAAACCCCTCAGGGGATTTTTGT
GCCCCGGGTCCAAACTTCTTCTTAAAAACACCCATCTCCCCCTCTGGGTT
TTAAAGGGACCCTGGGACTCCAAAAAAGGGGTGAACCCCCAGGCCTTGTT
TGGGCCAAAAAAAAATTTTTTTTTTACCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_k24.g1 MSMg01no130_k24.g1 CHROMAT_FILE:
MSMg01no130_k24.g1 PHD_FILE: MSMg01no130_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:36 2005
         (797 letters)



>mm_chr6_117524818_117526013
          Length = 1196

 Score = 1292 bits (668), Expect = 0.0
 Identities = 751/802 (93%), Gaps = 44/802 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctttcgaggttccgatgacaaaaccaacaca---cctttaccactttctatcctgggg 57
           |||||||||||||||||||||||||||||||||   ||   |||||||||||||||||||
Sbjct: 894 ccctttcgaggttccgatgacaaaaccaacacaattcc---accactttctatcctgggg 838

                                                                       
Query: 58  aaccggtaaggttttgttttttgtttttttttaaagcatcctcacacacactggtaatgg 117
           |||||||||||||||        ||||||||||| |||||||||||||||||||||| ||
Sbjct: 837 aaccggtaaggtttt--------tttttttttaatgcatcctcacacacactggtaacgg 786

                                                                       
Query: 118 attactgatgggaacttgggtgactccaaaacagacgcactgggaagtcttcagccagag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 attactgatgggaacttgggtgactccaaaacagacgcactgggaagtcttcagccagag 726

                                                                       
Query: 178 atgatggcttccttcgagccatgtacatggcgtgcccatctcctagtcttcccgagtcta 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 725 atgatggcttccttcgagccatgtacatggcgtgcccatctcctagtcttcctgagtcta 666

                                                                       
Query: 238 tacactctagcccttccctaagccccgtgcagatagggcagggttgcatacacgtggctt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 665 tacactctagcccttccctaagccccgtgcagatagggcagggttgcatacacatggctt 606

                                                                       
Query: 298 agtggagtggctgggcactcaggcgggattccagtgaccctccatactcactcccagggg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agtggagtggctgggcactcaggcgggattccagtgaccctccatactcactcccagggg 546

                                                                       
Query: 358 aggatgtcagcagccaaggggccaactgtgaggactgttccctcgcagacacagctggtc 417
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 545 aggatgtcagcagccaaggggccagctgtgaggactgttccctcgcagacacagctggtc 486

                                                                       
Query: 418 ttaggaagatggctgctctcctgggaggacagtgctgtgcagcatccctcattgtgagac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttaggaagatggctgctctcctgggaggacagtgctgtgcagcatccctcattgtgagac 426

                                                                       
Query: 478 actgaagagtgtccggggacagctggcgctgcttcagagagtgtcacaaatcacagcagc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 actgaagagtgtccggggacagctggcgctgcttcagagagtgtcacaaatcacagcagc 366

                                                                       
Query: 538 cagttactgtgctctgaaccttctgtgctgaaagtgccacattttaggcctgggtttggc 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cagttactgtgctctgaaccttctgtgctgaaagtgccacattttaggcctgggtttggc 306

                                                                       
Query: 598 agtacaaagaatatgcataactcagtagcaattcattcattcattcattcattcattcat 657
           ||||||||||||||||||||||||||||||                    ||||||||||
Sbjct: 305 agtacaaagaatatgcataactcagtagca--------------------attcattcat 266

                                                                       
Query: 658 tcattcattcattcattcattcatagtttggtttctcaagtcatgatttttttttg--tt 715
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||
Sbjct: 265 tcattcattcattcattcattcatggtttggtttctcaagtcatgatttttttttgtttt 206

                                                                       
Query: 716 gtttttgtttttgttgtttttgtttttgttttttttttgtagacctggctgtgctgaaac 775
           |||||||||    |||| ||  ||||| |||||||||| |||||||||||||||||||||
Sbjct: 205 gtttttgtt----ttgtctt--ttttt-tttttttttt-tagacctggctgtgctgaaac 154

                                 
Query: 776 tctgtagaccaggctggcctcg 797
           ||||||||||||||||||||||
Sbjct: 153 tctgtagaccaggctggcctcg 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 797
Length of database: 1196
Length adjustment: 10
Effective length of query: 787
Effective length of database: 1186
Effective search space:   933382
Effective search space used:   933382
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)