BAC Information

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BAC

Clone NameMSMg01-131B06
Chromosome6 (Build37)
Map Location 8,205,610 - 8,205,984
singlet/doubletsinglet
Overlap geneRpa3
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002
Downstream geneLOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131B06.T7 (MSMg01no131_b06.b1)MSMg01-131B06.TJ (MSMg01no131_b06.g1)
ACCAG338672AG338673
length760702
length of high quality
(start - end)
87 (77 - 163)379 (84 - 462)
definitionCHROMAT_FILE: MSMg01no131_b06.b1 PHD_FILE: MSMg01no131_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:11 2005CHROMAT_FILE: MSMg01no131_b06.g1 PHD_FILE: MSMg01no131_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATAATTTGCGGCGCTAAACGACTCCTAGATCGTGAGGAGCGCGGA
ATTCAATCCTTATACTAAAAAAATTAAAATTTCTTCCTGTATCACAAACT
GTCAAATTTGATTGCAGAATGACCCATGAATTTCTACTCCAGATTCCCTT
AGAAACAGAAGGGAAGGATGGGCATTGACAAGGCGCTTACCATACGGTGG
TTACATAGAGCTTAAACATCATTGCTAAGGAGAGGTTTTCTTTTCCTACG
TAATATTACTTCCCTAGGTCATGGATTTACTCTTTTCTTTGGGAATGTAT
CATATGAATCTCCTCAATCCTTTTTTTTTTCCCAACTCTACAGACATACA
TACCAACGAATTTGCCCGTGGACCTGCCCCCCTCCCGGAATTCACCACCA
CCCGTACCCCTTGCGCGCCGCCCCCTCAATGATGAAACCTTGAACCCCCT
TCCCGCTATGCCTAGTGTTCTCTGTCCATCGCACTAATCATTCTCTATTG
AATATAATCCTTACTGTTAAGAAGATACTTATATAGATTCGGGTGAAATA
AATTCTTTTCTTGTGTATTGGCCAATTCTAATCTACTCTTGTTTATAATA
TTACTCTGCCGAACCAACCCACCCGAACTCTTTATAAATTTCCTCCCACC
TGTATATATTTGATAACAACATATCGCGAGATTATATTACAATACTTGTC
TCCCTCTTTCCTACACTGCTCCTTGGTAACCCTCCTCGCCCCAGCTTCGA
ATTTATTCCC
TTCCCTNTCTCGATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACTAAGAATAATGG
CAAGCTTAAAGGCACGAAGAAAAAGTCAAAGATTCTGCCAACCCTACGAT
CACCTGTTTGGCAGTGGTCTATACACATTTTAGAATCCAAAATGAAGAAA
TTGACAAATTGGATACACGCCTGTTCTTTTCATTCACCAAAAGCATTTTC
TAAATAAGCTACTACGGAATAATCAGCATGGTAGATGGTAAGAAAATCAA
AGCATGGCTAGCTGGCCCAGGCTTCTATTTGGTAGATATAAGACCAAACC
TTATAGTTACAAAACTCCAAGCTTGAGACTGAAAAATAAAAACAATTGAC
CAACAGCATCATATTTTTGATTTTTATTATTCAGACCATATATTGAAGTA
TCACTTTTTTAAAAAGTTTATAAAAAGGCTTAGTTTGTAACTGTCATAAT
AGATTTACCAAAAAATATATATATATAAAAAGAACAAATTAAATATTAGA
AATTATAGGGAGTCGCTCCATTAAAACTGCAGGACTCTTTCCTTAATAGC
CTTCAGTGTAAGCTCCCTTCCCAATCTTAAGAAAACTTGAAGAAGCTCAT
TCTATGTTGGGGAAAGCCCTACCGGGAAAAACTTTAAGAAGGCTCCTTTG
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_b06.g1 MSMg01no131_b06.g1 CHROMAT_FILE:
MSMg01no131_b06.g1 PHD_FILE: MSMg01no131_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:11 2005
         (379 letters)



>mm_chr6_8205410_8206188
          Length = 779

 Score =  688 bits (356), Expect = 0.0
 Identities = 371/376 (98%), Gaps = 2/376 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catactaagaataatggcaagcttaaaggcacgaagaaaaagtcaaagattctgccaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactaagaataatggcaagcttaaaggcacgaagaaaaagtcaaagattctgccaacc 260

                                                                       
Query: 61  ctacgatcacctgtttggcagtggtctatacacattttagaatccaaaatgaagaaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacgatcacctgtttggcagtggtctatacacattttagaatccaaaatgaagaaattg 320

                                                                       
Query: 121 acaaattggatacacgcctgttcttttcattcaccaaaagcattttctaaataagctact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaattggatacacgcctgttcttttcattcaccaaaagcattttctaaataagctact 380

                                                                       
Query: 181 acggaataatcagcatggtagatggtaagaaaatcaa-agcatggctagctggcccaggc 239
           | ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 381 aaggaataatcagcatggtagatggtaagaaaatctatagcatggctagctggcccaggc 440

                                                                       
Query: 240 ttctatttggtagatataagaccaaaccttatagttacaaaactccaagcttgagactga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctatttggtagatataagaccaaaccttatagttacaaaactccaagcttgagactga 500

                                                                       
Query: 300 aaaataaaaacaattgaccaacagcatcatatttttgatttttattattcagaccatata 359
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 501 aaaataaaaacaattgaccaacagcatcatatttt-gatttttattattcagactatata 559

                           
Query: 360 ttgaagtatcactttt 375
           ||||||||||||||||
Sbjct: 560 ttgaagtatcactttt 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)