BAC Information

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BAC

Clone NameMSMg01-131C08
Chromosome6 (Build37)
Map Location 19,180,952 - 19,181,273
singlet/doubletsinglet
Overlap genenone
Upstream geneCftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131C08.T7 (MSMg01no131_c08.b1)MSMg01-131C08.TJ (MSMg01no131_c08.g1)
ACCAG338723AG338724
length700741
length of high quality
(start - end)
321 (380 - 700)322 (74 - 395)
definitionCHROMAT_FILE: MSMg01no131_c08.b1 PHD_FILE: MSMg01no131_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:16 2005CHROMAT_FILE: MSMg01no131_c08.g1 PHD_FILE: MSMg01no131_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:16 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCAATCTATAATTGCGGCGCTAAACGACTCACATCCCGAGTGGAGCGC
GGAATTCAGCTTTCGAAATATATGAGCACTTTACACTTTTTACAGTTCAC
TTTGTGATTGTCTTTTGTTCCGTTTGTTTGTTTTTGTTTTCGTTTTGTTT
TGTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCCGGCTGTCCTGGAA
CTCACTTTGTAGACTAGACTCAAACTCAGAAATCTGCTTGCCTCTGCCAT
ACTGTGTTTAATGAGTAAAAAAAGCATACTACACAGTAGAGAAATATAAT
AAACACTAACATAAAATTTATTATTAGTAATATTAGTAACATTTGTTTCC
ACATAATATTTTTATTACTCTCTATTATATAGGTTTCATGGTTTGTAGTT
TAGTCTTTCTCCTAAGCATCAATCACTTCTGTAGATTAATGCCATCATCA
AGGTCTTGAAAGAAGCAAGAGTGATGGTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTGTCTCCCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCATTATTTTTATTTATTTATTTTTTAATTTTA

CAATGAAGAGCGAGGCCTGGCGGCCGCCTGGCATCAAAAAAGGGGTGAAC
TATATAAGGATTCCCGTAATTCTTGGATCCTGTGTAAAGAATGCAAATCT
TGAAAGTCTAATTTTGTAGTTGCCTCCTTCTCTATACACACATAGATGTA
AAATTGATCCAGCCCAAAACTACAGTACTTCAGGTGCACTGGATCTCAAG
CAGAGGCTCTCAAGCTACTGTTTTCACAAGTGTCTACTCTAGTTAGATGC
AGGTAAAATTCCTGAATTTTGATAAATACATTAACACTTTAGAAAAGACT
AGAATTAAAATGCTACTTGAATGTTACTTATATCTTGGGAATATAGTTTT
TACTAAATTAAATGTGTTTGTCTTTGCTTAAAATTCCACTGAGGCATCTG
AATGTATCCACTGCATTTCTAACTTCTTGTGATTTTTTTATACTACTAAA
GTTTCATTTTGTTAAAAGTGATTTACTTTCTGTGAAAAATATGGTCTTAG
CAATTTATAATGCAGCTAATAAAACTACTACCATGCCCTTGATAATAAAA
ATTAGACCATATAAGGTTTCTGTTACAGTCCCACATTGTTTTTCAAACTT
ACTTTCCATTGAAACGATGAAAACGTTTTCTCATTTAAAATATATGTTCT
TTAAATTTATAACTATTTATAACTATATATTTACCATTCTTTGTACATTA
CTCTCCTCTTATATTTTTAAACTAACGTATAATAATTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_c08.g1 MSMg01no131_c08.g1 CHROMAT_FILE:
MSMg01no131_c08.g1 PHD_FILE: MSMg01no131_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:16 2005
         (322 letters)



>mm_chr6_19180752_19181473
          Length = 722

 Score =  561 bits (290), Expect = e-164
 Identities = 314/322 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatcctgtgtaaagaatgcaaatcttgaaagtctaattttgtagttgcctccttctct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 522 tggatcctgtgtaaagaatgcaaatcttgaaagtctaattttgtagttgcttccttctct 463

                                                                       
Query: 61  atacacacatagatgtaaaattgatccagcccaaaactacagtacttcaggtgcactgga 120
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 462 atacacacatagatataaaattgatccagtccaaaactacagtacttcaggtgcactgga 403

                                                                       
Query: 121 tctcaagcagaggctctcaagctactgttttcacaagtgtctactctagttagatgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tctcaagcagaggctctcaagctactgttttcacaagtgtctactctagttagatgcagg 343

                                                                       
Query: 181 taaaattcctgaattttgataaatacattaacactttagaaaagactagaattaaaatgc 240
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 342 aaaaattcctgaattttgaaaaatacattaacactttagaaaagactagaattaagatgc 283

                                                                       
Query: 241 tacttgaatgttacttatatcttgggaatatagtttttactaaattaaatgtgtttgtct 300
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 282 tacttgaatgttacttaaatcttgggaatatagtttttactaaattaaatttgtttgtct 223

                                 
Query: 301 ttgcttaaaattccactgaggc 322
           ||||||||||||||||||||||
Sbjct: 222 ttgcttaaaattccactgaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)