Query= MSMg01no131_c10.b1 MSMg01no131_c10.b1 CHROMAT_FILE:
MSMg01no131_c10.b1 PHD_FILE: MSMg01no131_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:16 2005
(543 letters)
>mm_chr6_103204200_103205143
Length = 944
Score = 835 bits (432), Expect = 0.0
Identities = 501/524 (95%), Gaps = 6/524 (1%)
Strand = Plus / Plus
Query: 1 agcttttatggaatatcactatgcagacattttcgttatcccaaac-tacacacagtcag 59
|||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 201 agctgttatggaatgtcactatgcagacattttcgttatcccaaacatacacacagtaag 260
Query: 60 ggttttttgagtaatactgctggtatctgggtttaatggtataaagacaaactattatta 119
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcttttgagcaatactgctggtatctgggtttaatggtataaagacaaactattatta 320
Query: 120 aatgttacaacagcttctgggagactcacaggtatctccccagaagccatccactttctg 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 aatgttacaacagcttctgggagactcacagatatctccccagaagccatccactttctg 380
Query: 180 agattcctaatttctgatttcctttcctgtgataaaatccacttgtgcacttggtgcctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattcctaatttctgatttcctttcctgtgataaaatccacttgtgcacttggtgcctt 440
Query: 240 tgtttttcatcacatgttccattggggaattggaacatgggaattgatgctaacatcata 299
|| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tggctctcatcacatgttccattggggaattggaacatgggaattgatgctaagatcata 500
Query: 300 atataaatcaataatttgtctgtttgctggttc-aagcacctttatttctgttagagaat 358
||||||||||||||||||||||||||||||| | || ||||| ||| ||||||||||||
Sbjct: 501 atataaatcaataatttgtctgtttgctggt-cgaaataccttgattcctgttagagaat 559
Query: 359 agtgacataaagtgttttttaaaaaat-tcaataaaatacttgtgaacgagaagatggcc 417
||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 560 agtgacataaagtattttttaaaaa-tctcaataaaatacttgtgaacgagaagatggcc 618
Query: 418 tagttg-tcatcattgggaagagaggccccttggtcttgcaaactttatatgccccagta 476
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tagctggtcatcattgggaagagaggccccttggtcttgcaaactttatatgccccagta 678
Query: 477 caggggaatgccagagccaagaagtgggagtgggtggatagagg 520
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaggggaatgccagagccaagaagtgggagtgggtggatagagg 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space: 497822
Effective search space used: 497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_c10.g1 MSMg01no131_c10.g1 CHROMAT_FILE:
MSMg01no131_c10.g1 PHD_FILE: MSMg01no131_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:16 2005
(263 letters)
>mm_chr6_103352378_103353039
Length = 662
Score = 424 bits (219), Expect = e-123
Identities = 252/263 (95%), Gaps = 1/263 (0%)
Strand = Plus / Minus
Query: 1 cagttgagtgaggaattctggaaatattcataaaagcactttttggagcaggaaaaaaaa 60
|||||| ||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 462 cagttgtgtgaggaatcctggaaagattcataaaagcactttttggagtagg-aaaaaaa 404
Query: 61 ttggcctcttttggcttacaaggtcatattttataccccagggatagtgtttcaactcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttggcctcttttggcttacaaggtcatattttataccccagggatagtgtttcaactcca 344
Query: 121 gacaagtaaatagggggctccatgctatgtcttaatacttcagtgcagataacatttcga 180
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
Sbjct: 343 gacaagtaaatagggggctccatgttatgtcttaatacttcagtgcagagaacatttcaa 284
Query: 181 aaatttcccccgaccattagcttaaaaactgtacagatttccttaaagggacccactcta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaatttcccccgaccattagcttaaaaactgtacagatttccttaaagggacccactctg 224
Query: 241 acagggtttattagaggcaatga 263
|||||||||| |||||||||||
Sbjct: 223 acagggtttaaaagaggcaatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 662
Length adjustment: 9
Effective length of query: 254
Effective length of database: 653
Effective search space: 165862
Effective search space used: 165862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
