BAC Information

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BAC

Clone NameMSMg01-131L15
Chromosome6 (Build37)
Map Location 32,761,228 - 32,761,416
singlet/doubletsinglet
Overlap geneChchd3
Upstream geneLOC620104, 1700012A03Rik, Plxna4
Downstream geneLOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131L15.T7 (MSMg01no131_l15.b1)MSMg01-131L15.TJ (MSMg01no131_l15.g1)
ACCAG339152AG339153
length709702
length of high quality
(start - end)
189 (130 - 318)203 (79 - 281)
definitionCHROMAT_FILE: MSMg01no131_l15.b1 PHD_FILE: MSMg01no131_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:03 2005CHROMAT_FILE: MSMg01no131_l15.g1 PHD_FILE: MSMg01no131_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCAACTCATAATTTGCGGCGCTATACGACTCCTATTCGAAGAGGAT
CCGCGGAATTCTGAATTACCCAAATCCTCATATTTTTTATCCTTGGACCA
AGCATGCCAAAGTAGCAGCATGGGCCCATGGAAATAAGTTACAAAGCCAT
GGGCTAAGATGACTTTGAACTTGTAGCAGTTTCAACTCTGTATATTGTAC
ACATACACATATTTAAGAAAAATCTAGGGCTGATACATTCTGTACACTTA
GGCAATAATGTTCCCAGTTATCTAATTAAAGAATTGCTTTACATGGTGTT
AGGTAAGAGGTGGCGCTGTAGAAAGGTCTGCCCTCTCTTCCTGAGCTTTT
CAGATGGGGACTTTTGTTTGTACCACCCCACCTGTCTCCATCAGTGTCCT
CTTGGAGATTCAACTTGTGTCCTGCAAATTTATTTCATTGTATATATCTA
AAAGGATCATGTCCCCAGATACTACATCTCTTATAGCCAAGGGCCATTCA
TATGAACTCCACTTACATTTTTTCCCCATGTACAATGCAAGAATCCCATT
TCCTCCGGATGCTCAGAATAAACTGACACTGGGAGTCCAACACTGAGGGC
TAAGTCATTCTCCAGGGATTTATTACAGCACTGTTACCCGCTGTTAATTA
ATCAGTATCTAATTCCTGTCATTGTATGAGTATAATAGAGAATAATGTCT
ATGATGGAA
TCCCCTTTCGATGAAGAGGGAGCCTGGCGGCGCCTGGTCACAACATTAGG
TGACCTATAGAATTTCCGCGAAAATCGAGCACTCTGGGTTGCTCATATAA
GTGGAATGACACCCTTCATCCCTCCGGGTTTGGCTTACTTCACTCAGACT
GGTCTTGAGTGCATCTATTAGAGTATGTGTCCAAATTACCTTCTTTTAGG
GGCTCTATAATATTCCACTGCATGGATATACCACATCCATTTATACAGGA
AGCTTTCTTGTAGAAAATGGATTTGGAGAGGAGAGGAGAGGAGTGAGGTA
ACCACGTGTGTGAGAGTCAATGTTGATGGTGAGAAAGCTCCATCCAAGCT
CCATGTCAGGAATATTTATACGCACCTGACTGAGGAATTTGCGAGTTACT
GAGATCTGTATCCCTTTGTCTTGATGAAAGATGAACCACATAGAAAACAA
CATCCGAAAGATCATCAGATCTCCCCTCTGAGCCCAAAGAAGACTCTAGA
GGATTCTTCATGTGAAATAAGCTATGATACATCTTAAAGAGAAAAAAGGG
TGACTCTGCATCCATAGTGGCTCCCAGTATGTCCCCTGAAGGATGTCATC
CTGCTGATTACCAATGTCAGGCCACTCAGTATTTTTTGACTCCGCACCAA
TCATTTCTCTCAGAGAGGTATTTGAACTTCTTGCCCACCATAATTTTACA
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_l15.b1 MSMg01no131_l15.b1 CHROMAT_FILE:
MSMg01no131_l15.b1 PHD_FILE: MSMg01no131_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:03 2005
         (189 letters)



>mm_chr6_32761028_32761616
          Length = 589

 Score =  358 bits (185), Expect = e-103
 Identities = 188/189 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaataagttacaaagccatgggctaagatgactttgaacttgtagcagtttcaactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggaaataagttacaaagccatgggctaagatgactttgaacttgtagcagtttcaactct 330

                                                                       
Query: 61  gtatattgtacacatacacatatttaagaaaaatctagggctgatacattctgtacactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtatattgtacacatacacatatttaagaaaaatctagggctgatacattctgtacactt 270

                                                                       
Query: 121 aggcaataatgttcccagttatctaattaaagaattgctttacatggtgttaggtaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aggcaataatgttcccagttatctaattaaagaattgctttacatggtgttaggtaagag 210

                    
Query: 181 gtggcgctg 189
           |||| ||||
Sbjct: 209 gtggtgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)