Query= MSMg01no131_m19.b1 MSMg01no131_m19.b1 CHROMAT_FILE:
MSMg01no131_m19.b1 PHD_FILE: MSMg01no131_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:08 2005
(666 letters)
>mm_chr6_16679908_16680973
Length = 1066
Score = 951 bits (492), Expect = 0.0
Identities = 588/662 (88%), Gaps = 68/662 (10%)
Strand = Plus / Plus
Query: 22 gaaaaaaatc-ttgtgtttacgttgctgattggccataaaacatgagcagttatgccctt 80
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 206 gaaaaaaatcattgtgtttacgttgctgattggccataaaacatgagcagctatggcctt 265
Query: 81 tcagaagtaaagtcagtaagcttcaatgttttgttttgttttgttttgttttgttttgtt 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcagaagtaaagtcagtaagcttcaatgttttgttttgttttgttttgttttgttttgtt 325
Query: 141 tt---------------ttatatccaatacttttagagataagactccatctaaatggat 185
|| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttgttttgttttgttttttacatccaatacttttagagataagactccatctaaatggat 385
Query: 186 acattcttttaagcacatctttagtatatataattcagttataaaatactgttaatctca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acattcttttaagcacatctttagtatatataattcagttataaaatactgttaatctca 445
Query: 246 ttctccatagaataaaataaattaaaaataatattttcccctatgataaaaggacatttc 305
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 446 ttctccatagaataaaataaattaaaaataagattttcccctatgataaaaggacatttc 505
Query: 306 cctatgaaaattttaaaatatttatttatttattta-tttaatttatttatttatttaat 364
||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 506 cctatgaaaattttaaagtatttatttatttatttaattta-tttatttatttatttaat 564
Query: 365 gtatatgagtacactgtcattgtctttagacacaccagaagagaacattggatcccaata 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 gtatatgagtacactgtcattgtctttagacacaccagaagagaacaatggatcccaata 624
Query: 425 tagatcgttgtgagcttccatatagttgctgggaattgaactcagaacctctgaaagagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagatcgttgtgagcttccatatagttgctgggaattgaactcagaacctctgaaagagt 684
Query: 485 acccaatgctcataaccactgagccatctgtccagccaagcatattcttcacttgatctt 544
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acccaatgctcataaccactgagccatctgtccagccaagcatattctt----------- 733
Query: 545 agccaaaaggccgagaagcgattggccaagcatattcttaatataggtagttttaacaaa 604
|||||||||||||||||||||
Sbjct: 734 ---------------------------------------aatataggtagttttaacaaa 754
Query: 605 atgaaaaaaagaagacagaatatacccgaggtattatgcagatttgcagattatgcaata 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 atgaaaaaaagaagacagaatatacccgaggtattatgcagatttgcagattatgcaata 814
Query: 665 tt 666
||
Sbjct: 815 tt 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_m19.g1 MSMg01no131_m19.g1 CHROMAT_FILE:
MSMg01no131_m19.g1 PHD_FILE: MSMg01no131_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:08 2005
(284 letters)
>mm_chr6_16815658_16816341
Length = 684
Score = 422 bits (218), Expect = e-122
Identities = 262/280 (93%), Gaps = 6/280 (2%)
Strand = Plus / Minus
Query: 1 tatatatctatgtatatgtgtatgtttatgtttatgtctatatctatatctctacatatc 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 543 tatatatctatgtatatgtg------tatgtttatgtctatatctatatctctacatatc 490
Query: 61 tatatctatggaacttttagaagaggaatacagaaccagcttctttgtttacttcacgaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 489 tatatctatggaacttttagaagaggaatacagaaccagcttctttgtttacttcatgaa 430
Query: 121 gaacactaactatatctaatgatgagagctatctgcacagtacatattagaactacaccc 180
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 429 gaacacaaactatatctaatgatgagagctgtctgcacagtacatattagaactacaccc 370
Query: 181 agtacaattcatctttaaactacttcttccaaagtgtattttcttgtaaatattattgct 240
||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 369 agtacaatttatcttttaactacttcttccaaagtttattttcttgtaaatattattgat 310
Query: 241 ttcttacaaaacaaatcccaacagtaatgccaacttatta 280
||| ||||||||||| |||| ||||||| ||||||||||
Sbjct: 309 ttcccacaaaacaaattccaatagtaatggcaacttatta 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
