Query= MSMg01no131_p15.b1 MSMg01no131_p15.b1 CHROMAT_FILE:
MSMg01no131_p15.b1 PHD_FILE: MSMg01no131_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:22 2005
(232 letters)
>mm_chr6_106563037_106563668
Length = 632
Score = 441 bits (228), Expect = e-128
Identities = 231/232 (99%)
Strand = Plus / Minus
Query: 1 cttcgacaagttgactttgggtgctatcatttatttggattatttttttgtgccctagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cttcgacaagttgactttgggtgctatcatttatttggattatttttttgtgccctagct 373
Query: 61 ggagtaagatatttgttcacacctctccaggaaaaattagaacaatagcctccacctaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggagtaagatatttgttcacacctctccaggaaaaattagaacaatagcctccacctaca 313
Query: 121 aacttacattttcaataaatttaataatgctttacacatgacaataattctagaaacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aacttacattttcaataaatttaataatgctttacacatgacaataattctagaaacaat 253
Query: 181 gtttgtatgttatataccaaacatttctatgagtggaatggctataacttct 232
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 252 gtttgtatgttatagaccaaacatttctatgagtggaatggctataacttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no131_p15.g1 MSMg01no131_p15.g1 CHROMAT_FILE:
MSMg01no131_p15.g1 PHD_FILE: MSMg01no131_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:22 2005
(422 letters)
>mm_chr6_106403916_106404737
Length = 822
Score = 694 bits (359), Expect = 0.0
Identities = 413/445 (92%), Gaps = 23/445 (5%)
Strand = Plus / Plus
Query: 1 aggagaatctttagtctgtaggatgaagtttgccatgacctcttaatccttatgctccca 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 178 aggagaatctttagtctgtaggatgaagtttgccatgacctcttaatatttattctccca 237
Query: 61 ataaagcaaaataaaataaaataaaat---------------------aaataaaataaa 99
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 238 gtaaagcaaaataaaataaaataaaataaaataaaataaaataaaataaaataaaataaa 297
Query: 100 at--aataaaataaaataaaataaccagacaccttagtactagcctttgccatggtgact 157
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ataaaataaaataaaataaaataaccagacaccttagtactagcctttgccatggtgact 357
Query: 158 gggcatactagtctcctacaaaccacatagctcttttaaaactcactcagtatagccaat 217
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 358 gggcatactagtctcctacaaaccacatagctctgttaaaactcactcagtatagccaat 417
Query: 218 ttaaagtaggtgtcctcctatctttcgtgatagactggtatcactaaaaatgcctggatt 277
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 418 ttaaagtaggtgtcctcctatctttcgtgagagactggtatcactaaaaatgcctggatt 477
Query: 278 gtcagtaatctgctttgcttccgcctggagccatttggaatctctccaggggtgagtgtt 337
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtcagtaatccgctttgcttctgcctggagccatttggaatctctccaggggtgagtgtt 537
Query: 338 cagtgaaatacattaaatcagcactcagcaattcttatacagcttggctttctgtgttga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cagtgaaatacattaaatcagcactcagcaattcttatacagcttggctttctgtgttga 597
Query: 398 atgatacacacacacacacacacac 422
|||||||||||||||||| ||||||
Sbjct: 598 atgatacacacacacacatacacac 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
