Query= MSMg01no132_j13.b1 MSMg01no132_j13.b1 CHROMAT_FILE:
MSMg01no132_j13.b1 PHD_FILE: MSMg01no132_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:09 2005
(615 letters)
>mm_chr6_12863029_12864043
Length = 1015
Score = 1094 bits (566), Expect = 0.0
Identities = 600/614 (97%), Gaps = 8/614 (1%)
Strand = Plus / Plus
Query: 6 gaattctaccg---tttcatttcctttgaaatactaagatcacaaatgtcagataccgaa 62
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctaccgggct---attacctttgaaatactaagatcacaaatgtcagataccgaa 262
Query: 63 aatgtacattagagacg-atcagcaagatttcttctctagccaaagtccttgaaatctca 121
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatgtacattagaga-gtatcagcaagatttcttctctagccaaagtccttgaaatctca 321
Query: 122 taaggacaggtttgcaagcagtttggtcatctacatcaagatgaaggacaacatgacaaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taaggacaggtttgcaagcagtttggtcatctacatcaagatgaaggacaacatgacaaa 381
Query: 182 acctgaaacggcaaagatgcctcagagttagaaacaaggactgtgaacaccaatccagaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acctgaaacggcaaagatgcctcagagttagaaacaaggactgtgaacaccaatccagaa 441
Query: 242 gtggaaggcaaagaaggaagctctcaggaggacacataaaatttcaaccactgtttttat 301
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 gtggaaggcaaagaaggaagctctcaggaggacacagaaaatttcaaccactgtttttat 501
Query: 302 gttgtacatatgcattattaatattctagaaaggattatcccctgagccaggtactccaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gttgtacatatgcattattaatattctagaaaggattatcccctgagccaggtactccaa 561
Query: 362 agcaaaagccttgggtggcatattttaatactgtgcagactttataacatccaattaata 421
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 562 agcaaaagccttgggtggcatattttaatactgtgcagacgttataacatccaattaata 621
Query: 422 acaaaaattacaagaaaagagtatgagctgggcaaaacataaaagagatagaaaaaaaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acaaaaattacaagaaaagagtatgagctgggcaaaacataaaagagatagaaaaaaaga 681
Query: 482 gactctctgatttaaaaagctgagcaaccaattttataaaactccactcacactggcagg 541
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 682 gactctctgatttaaaaagctgagcaaccaattttataaaactccagtcacattggcagg 741
Query: 542 atggaagtgcatgtcagagaggatatgatgttttataataagtcttagtaaattattata 601
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 742 atggaagtgcatgtcagagaggatatgatgttttataataagtattagtaaattattata 801
Query: 602 aaatctattgaata 615
||||||||||||||
Sbjct: 802 aaatctattgaata 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_j13.g1 MSMg01no132_j13.g1 CHROMAT_FILE:
MSMg01no132_j13.g1 PHD_FILE: MSMg01no132_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:09 2005
(283 letters)
>mm_chr6_13020494_13021177
Length = 684
Score = 526 bits (272), Expect = e-154
Identities = 281/284 (98%), Gaps = 1/284 (0%)
Strand = Plus / Minus
Query: 1 actcactgtgtagacagcaatattaaatttaaaaacttgagtcatatacaaaaggagt-a 59
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 484 actcactgtgtagacagcaatattaaatttaaaaacttgagtcatatagaaaaggagtaa 425
Query: 60 aaaaaaatgaataaatatactttcagaagttctgtgtacacactgtgtaccatagctcag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaaaaaatgaataaatatactttcagaagttctgtgtacacactgtgtaccatagctcag 365
Query: 120 aaatatcagtgattgtgacttccacacacacagtatcttactgtggctcaatgacagcga 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaatatcagtgattgtgacttacacacacacagtatcttactgtggctcaatgacagcga 305
Query: 180 gtcagagccaagccaacacttggcagccacaggtgcacaggggtgaattgtaatcagtac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtcagagccaagccaacacttggcagccacaggtgcacaggggtgaattgtaatcagtac 245
Query: 240 cggctccttacactgtgaccttggaagctttggagtacacaggg 283
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cggctccttacactgtgaccttggaagctttggagtacacaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
