BAC Information

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BAC

Clone NameMSMg01-133B24
Chromosome6 (Build37)
Map Location 28,698,899 - 28,699,059
singlet/doubletsinglet
Overlap geneSnd1
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350
Downstream geneLrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133B24.T7 (MSMg01no133_b24.b1)MSMg01-133B24.TJ (MSMg01no133_b24.g1)
ACCAG340186AG340187
length721693
length of high quality
(start - end)
62 (136 - 197)163 (132 - 294)
definitionCHROMAT_FILE: MSMg01no133_b24.b1 PHD_FILE: MSMg01no133_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:51 2005CHROMAT_FILE: MSMg01no133_b24.g1 PHD_FILE: MSMg01no133_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCATGTACCTNAACGACTCCTATAGGCAGAGGATCCGCGGAATTCCA
GAACATTCCACTTGAACCCGAGAGGTTGTTCAAGTACCCTTATCTCCACC
ATTGCCGATGTATACCTCTCCATACCTGGGATAGATCAATTTCTATTAAG
TCGGGCTGGTACCGGGGGGCTTTCTTCTAGAACAGGCCATCTAATAAGGG
CACATGGTCTTCCAAACCCTCTAACCTCTCTAATTTGAACTCCCAATGGC
CTAAACTGTGTATTCCAGCACAATCTGGAACAAACAGGGTTCCTTTTTCT
TATTATCTAGAACAGTTTTCTGAGTCCAAATGTAATTTAAGGTCAGAGCA
CTGCTTTTTTTATGCCCCCCCCCCCCCCCGAGTGGTGCACACTATACTTT
GCACACAAAGTGTGATGCGCCCATGTCACCTTCCCCTGGAGAGCTCTATA
CTGCGAATGTTTGTTCTGCTCTTTCTTTCCCTTCCTAGTGACTTCTAGTC
TATGACTGACTACTGTTTGCCCCTTTTATTGATGCATCCGCTAGGAGAAA
AGCAGGCTTCAAGAGATGGCATCAATGCTTTTCACGCCCTATTGGTTTTC
CCGTTCTATTGGCTGTGAACTCACGGAAGATCTGCGGCGGGAGCGCCCCT
GCACCTGTATCGTTGCTGGCCTTCTTTTATTCCTGCCCCACTACCCCTCC
CACTGGCTTGATTTTTCGTTG
NNNGACTATACCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCCGAAATCACGTTAGCTCAGTCACTCACCGTG
TGTGTGCAGCTTTATTTTGTTTTCTCCTCAAAAAAAGACTGAAGCATATA
TTTGCAGCTCATGTGCCTCTTGATTCTTATTTTTTATGAGCATGGGGTGT
GTGCCCTACTATTACCATGACCTTTGTGTGAAGGTTTTTTGTTGTAAATT
ACATGGCACCCCTTGGGCATCAGGGCCATGCTGAGGGCACAGTTCAGGAA
GTTGCCCTACTGACTAACCATAGCAGGTATCAAGGTAATGTCCTGTAAAC
AAAATGCCTTCTCCAGAACTAAAACAGAAGAGTAATTTGAACCTTCTGGG
TAAAGCAACGTACGGAATCTTAAATCAGGTCTTTGGCATCTTTTGCCAAC
CTAGGCTGAAACACATACAAATTGTTTGCCCTTCTATGCCCTAAAGTTGG
CGCAGTCTGTCGAGTTACAAGCCTAGGCGACCACGGTGAGGGGCTGGGCT
ACATAACACTCACCTTACATAGAACTGACTCTTGCCACAAACTGCCTAGA
TTGGTACACTCACTCGGTCTGTTTTTTATGTGGACCCCATCACATGACTT
ACCCTTACCTTCTCTTCTACACTCTGATCTACGACGAGAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_b24.g1 MSMg01no133_b24.g1 CHROMAT_FILE:
MSMg01no133_b24.g1 PHD_FILE: MSMg01no133_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:51 2005
         (163 letters)



>mm_chr6_28698697_28699259
          Length = 563

 Score =  288 bits (149), Expect = 1e-82
 Identities = 158/161 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaagactgaagcatatatttgcagctcatgtgcctcttgattcttattttttatgagcat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaagactgaagcatatatttgcagctcatgtgcctcttgattcttattttttatgagcat 262

                                                                       
Query: 63  ggggtgtgtgccctactattaccatgacctttgtgtgaaggttttttgttgtaaattaca 122
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggagtgtgtgccctactattaccatgacctttgtgtgaaggttttttgttgtaaattaca 322

                                                    
Query: 123 tggcaccccttgggcatcagggccatgctgagggcacagtt 163
           ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgataccccttgggcatcagggccatgctgagggcacagtt 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)