BAC Information

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BAC

Clone NameMSMg01-133J06
Chromosome6 (Build37)
Map Location 34,899,394 - 34,899,697
singlet/doubletsinglet
Overlap gene2010107G12Rik
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8
Downstream geneCnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133J06.T7 (MSMg01no133_j06.b1)MSMg01-133J06.TJ (MSMg01no133_j06.g1)
ACCAG340518AG340519
length704703
length of high quality
(start - end)
311 (43 - 353)204 (80 - 283)
definitionCHROMAT_FILE: MSMg01no133_j06.b1 PHD_FILE: MSMg01no133_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:25 2005CHROMAT_FILE: MSMg01no133_j06.g1 PHD_FILE: MSMg01no133_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACCCATATACAAGGACAGAAGGGGCAAGAGAGAGCCATGTACACAAA
GATTTGGTGGGAGAATATTCCACGAGAGAAAGTGGTTCATGTGAGCTCTA
CTATGAGAAAAGCAATTTTAAAGCACGAGGAAAATCAGTGCACCTGGGCT
ACAGTGCCCAGGAGAGTGGAGGGAACCCGCCAAGGGACAGCTCCAGCCTG
CAGGGCCCTGGGGGCTCAGGAGTGGGCAGAAACAAAATGTGCCCTACAAT
GGTTCTCTAAGGAAAGTACTTCTGATACCTGGTGCAACATGTGGATGAGG
NTTGTGGTATTATATTCCCATGTCTAACCCCCCGNAGGCTCATGCTTGGT
TCCCTACTTGTAGTGCTGACTGGAGAAGATATGGAACATTTAGGAGGCCG
AGTCTTCTGCTGATGGGTGGGCTTTTATAGCCTTGTGGTCCTAAGCCTGT
TCTCTCTCTGTCTCTGTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTC
TCTGTCTGTCTGTCTATCTCTGTCTGATTTTCTGTCTCTCTCTGTGTGAC
TGTCTCTCTGTGTTTCTCTATCTCTCTATGTTTCTGCCTCTGATTTTCCC
TGTCTCTGTCTATGTCACTCTCCTCCTCTGAATCCCTCCCTCCATCTCTC
TCCT
NACGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGTCGNAATACATAGTCCTCTTACCTCTAGAGTGCT
AGGATTATAGACATGTCCCCAAAACCCAAGAGACATTGGCCTTTTGTGAT
TTTTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
TTCTTTTTTTTTTTTTTTGCTTTTCGAGACAGGGTTTCTCTGTAGCCCTG
GCTGTCCCGGAATTCACTTTGGAGATCAGGTTGGCCTCGAACTCAAAAAT
ACCTGCCTTTGTCTCCCAAGTGTGTTATTAAAGGCATGGGCCACCACGCC
TGGCCTAATTCTTTGTATATTGCACGAACAAAATCTTTGTCAAAAATTTA
GTTTGCAAGCTGTCTGTGGCACTCATCTCTGCAATTCCAATATTCAGGAG
ATTTCCGACTACTACTCTACCCCATTGATTTGACCCCCACAGCTTCTTTT
TTGACGCTTGTCTGGGCCTGTAACCCAGTCCCAGATCCATCTAGGCTACT
TAGTGCGCTCTTGTTTCAATCTCTCAACAGCACTTCGTTCGCCGTTTTCT
CCTCTTTTCTACTCTCTCTGCCCTCTCTTTAATGTTTTCCCCCCCGTTAG
GTCTTGTTCACCTTTCCTTCTCATCTTACCTCTCCCTTCTCTTCCTCCTT
ACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_j06.b1 MSMg01no133_j06.b1 CHROMAT_FILE:
MSMg01no133_j06.b1 PHD_FILE: MSMg01no133_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:25 2005
         (311 letters)



>mm_chr6_34899190_34899900
          Length = 711

 Score =  536 bits (277), Expect = e-157
 Identities = 298/305 (97%), Gaps = 2/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacccatatacaaggacagaaggggcaagagagagccatgtacacaaagatttg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacccatatataaggacagaaggggcaagagagagccatgtacacaaagatttg 264

                                                                       
Query: 65  gtgggagaatattccacgagagaaagtggttcatgtgagctctactatgagaaaagcaat 124
           |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 gtgggagaatattcta-gagagaaagtggttcatgtgagctctactatgggaaaagcaat 323

                                                                       
Query: 125 tttaaagcacgaggaaaatcagtgcacctgggctacagtgcccaggagagtggagggaac 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 tttaaagcacgaggaaaatcagtgcacctgggctacagtgcccgggagagtggagggaac 383

                                                                       
Query: 185 ccgccaagggacag-ctccagcctgcagggccctgggggctcaggagtgggcagaaacaa 243
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 ccgccaagggacaggctccagcctgcagggccttgggggctcaggagtgggcagaaacaa 443

                                                                       
Query: 244 aatgtgccctacaatggttctctaaggaaagtacttctgatacctggtgcaacatgtgga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatgtgccctacaatggttctctaaggaaagtacttctgatacctggtgcaacatgtgga 503

                
Query: 304 tgagg 308
           |||||
Sbjct: 504 tgagg 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)