BAC Information

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BAC

Clone NameMSMg01-134E07
Chromosome6 (Build37)
Map Location 104,698,649 - 104,699,396
singlet/doubletsinglet
Overlap geneCntn6
Upstream geneLOC100043345
Downstream geneLOC384470, LOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134E07.T7 (MSMg01no134_e07.b1)MSMg01-134E07.TJ (MSMg01no134_e07.g1)
ACCAG341024AG341025
length1,1931,233
length of high quality
(start - end)		725 (91 - 815)742 (129 - 870)
definitionCHROMAT_FILE: MSMg01no134_e07.b1 PHD_FILE: MSMg01no134_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:30 2005CHROMAT_FILE: MSMg01no134_e07.g1 PHD_FILE: MSMg01no134_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCACGCCATGNNNNNGCAATGCGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGAGGAATACCCCCATTACAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTACCCTTCAGGGAAATGCAAATCAAAACAAC
CCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCATTACTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAATGGATGGACCTGGAGGGCATCATTCTGAGTGAGGTAACACA
TTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGC
CCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGA
AACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGA
AGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGC
TGAGATTAAAGGGTGGACCATGTAGAGACTGCCTTATCCAGGGATCCACC
CCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTT
TTATCGAAGGAACCCCATGTAGCTGTCTCTTGTGAGAAAATGCCGGGGCC
TAACAAAACAGAAAAGGATGGCCCCCGTCCGCCTATGGAAGGATCACAGG
GCTCCCCCTGGAGGAGGTAGAAAAAGTACCCACGGAGCTAAGGGATCTGT
CACCCCCTATGCGGGTTAACATTATTAATAATCCCGTACCCCGGAAACTT
GAATTTTGCTGCTTTGTTTTAAAAAATGGCCAAACCGCCCTTCTTGTGAA
AAAAGGCCTTGGAACCCCCAATTTTTTAGTCCCAAAAGGGGAA

NCCTTCTCTTTNTNAAACATGGNAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAAAGTCTTTATTTTT
TCATTTCTGCCTTGATCCATCTTTTATGCAGTAGAGATTCCTTCAGTTTC
CATGGGCTTGTAAATGTTCTATTGTTTCTGTTGTTGATATTCAGCTTTAA
TCTGTAGTGTTCTGACCGATTAAAGGAAATTATTTTCTTGAGAAATCACA
TTTTCAATTTTCTGGAGAAAAGACATTGTCTTAACAGTGTCTTTCCTTGA
ACTCTATGTTTCTGCATAGTGGAGAATTTTGGATTTTTTCCTAGTTGTTA
TTGTTACTTGGTTCTTTCGGTTGTTTGTTTAATTTTTTAAAGGAGCATGC
TTTTGGTTAAATGTGAAATCTCTTCAACACAATCAAGATTACATAGATTT
GCAAAGTTTGCCTTCTAGATGTCTTACAGTTTGTGCTTTACACGTTGGTT
TATGATTTGTTTTGCATTAAATTATTTGAAAACCGTTTATTTTTATTTTT
TAAATCATTTATTACCTATGAGCAGAAAATTATTCTGACATCTATTGAAA
GCTGGTGAATTCTACACTGCATACCTTTCAGTTCTTGGCAAAGATATATG
AAACAAGTATTTTTTTTCTGAAATTATAACTTTTCCATTTTTCTGTTCCT
CTTCCTTTTCCTCCTCTTCCCCAACCCTTCTGCTCCTCTGACATCTCCTT
CTCTGCCACCATCTCTTACTTTACTTCTTCTAATGGAATGATCTGGCCAT
TATGTCTGTGGTTAATGCTCTGTCAGAAAATTTCAGTGTTCCTGGTTATT
CCAAATATTCTGCTTATTTTGATAATTTAATGGCAATTCATTTTTTTCTA
TAATTTCTGCATAAACTTTTGAATAATTTTCTATTTTCCCCAAATTTGAT
AAATGGGGGAACTCCTGAACCTCTTGAAAAAAACTCCCCTATTAAAAAAA
TTAAGGGTCCACTAAAAATGTATAAAATTGTTCCCCCTTTTAATTGGAGG
CTCTCCAATTGTTTTCCAAAAAGATGAAATTTTGCCCTCCCCTCCCGGGA
GGAATAATAGCAAAATAAAGGGGGGTAAAATAAAAATGTTAAATTCCATA
ATTGTGGGGGGGGGGGGGATTTTATATTTTTCTNATCACCCTCTCCACTA
TTTCCCCTTTATTATATTTTTGTACTTAATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_e07.g1 MSMg01no134_e07.g1 CHROMAT_FILE:
MSMg01no134_e07.g1 PHD_FILE: MSMg01no134_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:30 2005
         (742 letters)



>mm_chr6_104698455_104699596
          Length = 1142

 Score = 1377 bits (712), Expect = 0.0
 Identities = 737/748 (98%), Gaps = 6/748 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtagagattccttcagtttccatgggcttgtaaatgttctattgtttctgttgttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cagtagagattccttcagtttccatgggcttgtaaatgttctattgtttctgttgttgat 254

                                                                       
Query: 61  attcagctttaatctgtagtgttctgaccgattaaaggaaattattttcttgagaaatca 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attcagttttaatctgtagtgttctgaccgattaaaggaaattattttcttgagaaatca 314

                                                                       
Query: 121 cattttcaattttctggagaaaagacattgtcttaac-----agtgtctttccttgaact 175
           |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||
Sbjct: 315 cattttcaattttctggagaaaagacattgtcttaacttaacagtgtctttccttgaact 374

                                                                       
Query: 176 ctatgtttctgcatagtggagaattttggatttttt-cctagttgttattgttacttggt 234
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 375 ctatgtttctgcatagtggagaattttggatttttttcctagttgttattgttacttggt 434

                                                                       
Query: 235 tctttcggttgtttgtttaattttttaaaggagcatgcttttggttaaatgtgaaatctc 294
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 435 tctttcggttgtttgtttaattttttaaaggagcatgcttttagttaaatgtgaaatctc 494

                                                                       
Query: 295 ttcaacacaatcaagattacatagatttgcaaagtttgccttctagatgtcttacagttt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttcaacacaatcaagattacatagatttgcaaagtttgccttctagatgtcttacagttt 554

                                                                       
Query: 355 gtgctttacacgttggtttatgatttgttttgcattaaattatttgaaaaccgtttattt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtgctttacacgttggtttatgatttgttttgcattaaattatttgaaaaccgtttattt 614

                                                                       
Query: 415 ttattttttaaatcatttattacctatgagcagaaaattattctgacatctattgaaagc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttattttttaaatcatttattacctatgagcagaaaattattctgacatctattgaaagc 674

                                                                       
Query: 475 tggtgaattctacactgcatacctttcagttcttggcaaagatatatgaaacaagtattt 534
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 675 tggtgaattctacactgcatacctttcagttcttggcaaagatatgtgaaacgagtattt 734

                                                                       
Query: 535 tttttctgaaattataacttttccatttttctgttcctcttccttttcctcctcttcccc 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tttttctgaaattataacttttccatttttctgttcctcttccttttcctcctcttcccc 794

                                                                       
Query: 595 aacccttctgctcctctgacatctccttctctgccaccatctcttactttacttcttcta 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aacccttctgctcctctgacatctccttctctgccaccatctcttactttacttcttcta 854

                                                                       
Query: 655 atggaatgatctggccattatgtctgtggttaatgctctgtcagaaaatttcagtgttcc 714
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 855 atggaatgatctggccattatgactgtggttaatgctctgtcagaaaatttcagtgttcc 914

                                       
Query: 715 tggttattccaaatattctgcttatttt 742
           ||||||||||||||||||||||||||||
Sbjct: 915 tggttattccaaatattctgcttatttt 942


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space:   828624
Effective search space used:   828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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