BAC Information

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BAC

Clone NameMSMg01-135J08
Chromosome6 (Build37)
Map Location 42,210,769 - 42,371,803
singlet/doubletdoublet
Overlap geneTmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135
Upstream geneTry4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1
Downstream geneTas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135J08.T7 (MSMg01no135_j08.b1)MSMg01-135J08.TJ (MSMg01no135_j08.g1)
ACCAG342006AG342007
length706707
length of high quality
(start - end)		665 (42 - 706)640 (68 - 707)
definitionCHROMAT_FILE: MSMg01no135_j08.b1 PHD_FILE: MSMg01no135_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:45 2005CHROMAT_FILE: MSMg01no135_j08.g1 PHD_FILE: MSMg01no135_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,210,769 - 42,211,445)(42,371,164 - 42,371,803)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATTCC
AGCCATACCTCCTCCATATGACCGGAATAGTAAGGAAACTGGTGCAAACA
AATGAAAACACTTGGGTACAAGCAAAATAGCCACACATTGCCCTTCCTGT
GCCCCTTCTTACTTTATAAAGGGATACACCTCATATGGGTTCTATAGTCT
GCCATGATGCCCTATCCTTTCCTCCAGAGCAGTCTTGGACAGAGGATCCC
TAGGAAGTCTTGCCATTACTGATATGCTCATTCTCATATCCATTTTCATT
CTCTCTCTCCCCTTTTTTCTTCCCTCCCCTCTCTCTGTTTCTCCTATCAG
GGCCCCCATAACTGTTCCTGAGGACCTTAGATTGTATTTGTATTCTTGTC
TCTGTAGCTTGATAGGGTTTGTCCAGTGCTAATGCGGTGAGGGAATAGAG
TCCACAGGGACACAGCGGACCACCTCCCTCTCTCACACTTCCTCACAGCC
CAAACTCACAAATAGAGCCTTAGAGCAGCTATGGGAGCCACAGGGTACAA
TGAAACCCTTTGTGGGGCTAGCTCTGATCAGAGCATAAACTTAAGGGTGT
GCTCTACCCAGTGTCAAGAATCCACTTTTTACAGGGATTCCAAGAACATT
GAAAAAAAAATCACTTTTCTTATAATGCTCAAAGTANAAGAACAGTAAAT
AAACAT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGGCCCTGGCCCTACAGGATTCCCTAAATTC
ATAAATGCCATTTACAGATTTCAAATTGAGACTGAAATGAGGAAGCCTCT
TAGAAGTTTGGTAACTTTACTTCTCAGGGTTACGTCATGACCTGTTGTTT
TGCTACCACGGTGATCAGGAAAACAGAGGGGAAATAAGGTACTCCTTGAA
GGATGACTGCTTCAAAAACAAGGACAAACACAATAGGGACTAACAATGTG
GGTCAGAAACAGTTGCCTTAGGGCTGACCCAGACTAGAGTGAAGATGCCA
GGAGAAGAGTTTTCACTGGGAAGCCAGTGGACTTTCCAGATTGTGTGCTT
TACAGTAGGCTTAAAGATTCTCACCCAATGTTTAAAATAAGCAAGTAAAT
GTGAACGGAGAAGTAAGGAAAACATCTCAAGGTTTCAATCAGCTTTACCT
AAGAATGAACTTTAACAGTGTCAGGGCAGGGGTCATGTGCCCCAAACTCA
GTGACTTTGGGACTCTTTTGATATGAGCTATCTATAAGTGCCTTCTAGAG
GAAAGCAAGACACAGAAGGATGTTCAGGCACACACCACCTTGGGAACTTT
CTAGAATCTTGATGGGGTGCTCCGCAAAGCAGTGTTCAAGACACTCCCCA
CATCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_j08.b1 MSMg01no135_j08.b1 CHROMAT_FILE:
MSMg01no135_j08.b1 PHD_FILE: MSMg01no135_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:45 2005
         (665 letters)



>mm_chr6_42210583_42211645
          Length = 1063

 Score = 1183 bits (612), Expect = 0.0
 Identities = 655/681 (96%), Gaps = 22/681 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccagccatacctcctccatatgaccggaatagtaaggaaactggtgcaaacaaat 62
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaattccagccataccttctccatatgaccggaatagtaaggaaactggtgcaaacaaat 246

                                                                       
Query: 63  gaaaacacttgggtacaagcaaaatagccacacattgcccttcctgtgccccttcttact 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaaaacacttgggtacaagcaaaatagccacacattgcccttcctgtgccccttcttact 306

                                                                       
Query: 123 ttataaagggatacacctcatatgggttctatagtctgccatgatgccctatcctttcct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttataaagggatacacctcatatgggttctatagtctgccatgatgccctatcctttcct 366

                                                                       
Query: 183 ccagagcagtcttggacagaggatccctaggaagtcttgccattactgatatgctcattc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ccagagcagtcttggacagaggatccctaggaagtcttgccattactgatatgctcattc 426

                                                                       
Query: 243 tcatatccattttcattctctctctc----------------cccttttttcttccctcc 286
           ||||||||||||||||||||||||||                ||||||||||||||||| 
Sbjct: 427 tcatatccattttcattctctctctctctctttctctctccccccttttttcttccctct 486

                                                                       
Query: 287 cctctctctgtttctcctatcagggcccccataactgttcctgaggaccttagattgtat 346
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cctctct--gtttctcctatcagggcccccataactgttcctgaggaccttagattgtat 544

                                                                       
Query: 347 ttgtattcttgtctctgtagcttgatagggtttgtccagtgctaatgcggtgagggaata 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttgtattcttgtctctgtagcttgatagggtttgtccagtgctaatgcggtgagggaata 604

                                                                       
Query: 407 gagtccacagggacacagcggaccacctc-c-ctctctcacacttcctcacagcccaaac 464
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 605 gagtccacagggacacagcggaccacctctctctctctcacacttcctcacagcccaaac 664

                                                                       
Query: 465 tcacaaatagagccttagagcagctatgggagccacagggtacaatgaaaccctttgtgg 524
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 tcacaaatagagccttagagcagctatgggagccacagggtgcaatgaaaccctttgtgg 724

                                                                       
Query: 525 ggctagctctgatcagagcataaacttaagggtgtgctctacccagtgtcaagaatccac 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggctagctctgatcagagcataaacttaagggtgtgctctacccagtgtcaagaatccac 784

                                                                       
Query: 585 tttttacagggattccaagaacattgaaaaaaaaatcacttttcttataatgctcaaagt 644
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 785 tttttacagggattccaagaacattgaaaaaaa--tcacttttcttataatgctcaaagt 842

                                
Query: 645 anaagaacagtaaataaacat 665
           | |||||||||||||||||||
Sbjct: 843 aaaagaacagtaaataaacat 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1063
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1053
Effective search space:   689715
Effective search space used:   689715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no135_j08.g1 MSMg01no135_j08.g1 CHROMAT_FILE:
MSMg01no135_j08.g1 PHD_FILE: MSMg01no135_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:45 2005
         (640 letters)



>mm_chr6_42370964_42372003
          Length = 1040

 Score = 1207 bits (624), Expect = 0.0
 Identities = 636/640 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggccctggccctacaggattccctaaattcataaatgccatttacagatttcaaatt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 840 tctggccctggccctacaggattccctaagttcataaatgccatttacagatttcaaatt 781

                                                                       
Query: 61  gagactgaaatgaggaagcctcttagaagtttggtaactttacttctcagggttacgtca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gagactgaaatgaggaagtctcttagaagtttggtaactttacttctcagggttacgtca 721

                                                                       
Query: 121 tgacctgttgttttgctaccacggtgatcaggaaaacagaggggaaataaggtactcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tgacctgttgttttgctaccacggtgatcaggaaaacagaggggaaataaggtactcctt 661

                                                                       
Query: 181 gaaggatgactgcttcaaaaacaaggacaaacacaatagggactaacaatgtgggtcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaaggatgactgcttcaaaaacaaggacaaacacaatagggactaacaatgtgggtcaga 601

                                                                       
Query: 241 aacagttgccttagggctgacccagactagagtgaagatgccaggagaagagttttcact 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aacagttgccctagggctgacccagactagagtgaagatgccaggagaagagttttcact 541

                                                                       
Query: 301 gggaagccagtggactttccagattgtgtgctttacagtaggcttaaagattctcaccca 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 540 gggaagccagtggactttccagattgtgtgctttacagtagacttaaagattctcaccca 481

                                                                       
Query: 361 atgtttaaaataagcaagtaaatgtgaacggagaagtaaggaaaacatctcaaggtttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atgtttaaaataagcaagtaaatgtgaacggagaagtaaggaaaacatctcaaggtttca 421

                                                                       
Query: 421 atcagctttacctaagaatgaactttaacagtgtcagggcaggggtcatgtgccccaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atcagctttacctaagaatgaactttaacagtgtcagggcaggggtcatgtgccccaaac 361

                                                                       
Query: 481 tcagtgactttgggactcttttgatatgagctatctataagtgccttctagaggaaagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcagtgactttgggactcttttgatatgagctatctataagtgccttctagaggaaagca 301

                                                                       
Query: 541 agacacagaaggatgttcaggcacacaccaccttgggaactttctagaatcttgatgggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agacacagaaggatgttcaggcacacaccaccttgggaactttctagaatcttgatgggg 241

                                                   
Query: 601 tgctccgcaaagcagtgttcaagacactccccacatcgga 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgctccgcaaagcagtgttcaagacactccccacatcgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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