Query= MSMg01no136_i19.b1 MSMg01no136_i19.b1 CHROMAT_FILE:
MSMg01no136_i19.b1 PHD_FILE: MSMg01no136_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:58 2005
(628 letters)
>mm_chr6_51331895_51332923
Length = 1029
Score = 876 bits (453), Expect = 0.0
Identities = 515/545 (94%), Gaps = 19/545 (3%)
Strand = Plus / Minus
Query: 5 gaattccaggctaacctcgagtcacatgaggctctgtctcaaaaaaaaaaaccccagaat 64
||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct: 533 gaattccaggctaacct-gagtcacatgaggctctgtctc-----aagaaaccccagaat 480
Query: 65 attttaaaatgaaagtttctgcctttggtgcttattagcttataattgacagaatattgg 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 479 attttaaaatgaaagtttctgtctttggtgcttattagcttataattgacagaatattgg 420
Query: 125 gagaatgggtaaagcaggtccgccacaaggcttagccatctgagtggatgctgattggat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gagaatgggtaaagcaggtccgccacaaggcttagccatctgagtggatgctgattggat 360
Query: 185 ggattgtgaacaacagctgtcacctgtcacctgactggagagcctcagggagtccctttc 244
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggattgtgaacatcagctgttacctgtcacctgactggagagcctcagggagtccctttc 300
Query: 245 tcatattt-aaaaaaaaatggaattaaacattcttttaaatttaatttttatttacgtat 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcatatttaaaaaaaaaatggaattaaacattcttttaaatttaatttttatttacgtat 240
Query: 304 gcatgggagtgtctgtgtgtgcagttgttgcatgagtgtgggtgcctgcagaggccagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gcatgggagtgtctgtgtgtgcagttgttgcatgagtgtgggtgcctgcagaggccagaa 180
Query: 364 catagtg------tccccccccctggatttataggcagttgcaagccacctaacgtcggt 417
||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct: 179 catagtgttggatt------ccctggatttataggcagttgcaagccacctaacgtgggt 126
Query: 418 gctgggaaccaaccttcagatctcgtcaagagcagcaagtgctcctaaccgctgagccat 477
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gctgtgaaccaaccttgggatctcgtcaagagcagcaagtgctcctaaccgctgagccat 66
Query: 478 ctcgccagcctttgctctcctatcttgacccagtgcttgacattatgacattagccattc 537
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 65 ctctccagcctttgctctcctatcttgacccagcgcttgccattatgacattagccattc 6
Query: 538 tcaga 542
|||||
Sbjct: 5 tcaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_i19.g1 MSMg01no136_i19.g1 CHROMAT_FILE:
MSMg01no136_i19.g1 PHD_FILE: MSMg01no136_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:58 2005
(600 letters)
>mm_chr6_51203752_51204751
Length = 1000
Score = 1114 bits (576), Expect = 0.0
Identities = 594/600 (99%)
Strand = Plus / Plus
Query: 1 tttatcccaccctcaccccaatccttaaaccacctgtagcgttgttttagtctctacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatcccaccctcaccccaatccttaaaccacctgtagcgttgttttagtctctacaga 260
Query: 61 gatagtatcactgcaggctttatgtatttacttgaggtactaggaactgaacccagagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatagtatcactgcaggctttatgtatttacttgaggtactaggaactgaacccagagct 320
Query: 121 attacatgatctaacattcgcccagacgtccccaggtaaaggtagttggaagtcgctcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attacatgatctaacattcgcccagacgtccccaggtaaaggtagttggaagtcgctcac 380
Query: 181 agggcatgttacaatgctctggtggcttctgacagccatgtagtgacagagtaaaggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggcatgttacaatgctctggtggcttctgacagccatgtagtgacagagtaaaggtgg 440
Query: 241 cccagaaggtcccaaagatggatccctgctactagtggccaatcaggtctggccattccc 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 cccagaaggtcccaaagatggatccctgctactagtggccaatcaggtcttgccattccc 500
Query: 301 cctgggcaccagctctctggccctctgctgcatctttcaaagaccctctctgggatttag 360
| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 501 cgtgggcaccagctctctggccctctgctgcatctttcaaagagcttctctgggatttag 560
Query: 361 actggcacctgccttgctgtttgacagctttgaaatactggacaaactacttaactgttt 420
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accggcacctgccttgctatttgacagctttgaaatactggacaaactacttaactgttt 620
Query: 421 catgactctgcttccttatccattggggatgatactagagtgatgtcattacgaaaatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgactctgcttccttatccattggggatgatactagagtgatgtcattacgaaaatta 680
Query: 481 actgaggtgatacaaatgaggtgtccaataaagcctgatgcagacatgtgctctataaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgaggtgatacaaatgaggtgtccaataaagcctgatgcagacatgtgctctataaac 740
Query: 541 ttaatcacttgtgttatattaaaaacagagatcttgtattataattaagaattgtcctca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaatcacttgtgttatattaaaaacagagatcttgtattataattaagaattgtcctca 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
