Query= MSMg01no137_b12.b1 MSMg01no137_b12.b1 CHROMAT_FILE:
MSMg01no137_b12.b1 PHD_FILE: MSMg01no137_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:40 2005
(636 letters)
>mm_chr6_106111957_106112994
Length = 1038
Score = 1174 bits (607), Expect = 0.0
Identities = 628/635 (98%), Gaps = 2/635 (0%)
Strand = Plus / Minus
Query: 4 gaattcatacaaggaccgaaaagttatgaactgtgatgagcatgctcatagagattagga 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gaattcatacaaggagagaaaagttatgaactgtgatgagcatgctcatagagattagga 779
Query: 64 tattggtggaaagggaaaaatattactcttcatagcctgatgataccatggattgatgct 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tactggtggaaagggaaaaatattactcttcatagcctgatgataccatggattgatgct 719
Query: 124 aatagtgttgctttgaatcttcaaatcttacctatggtcttgttctatctacattttaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aatagtgttgctttgaatcttcaaatcttacctatggtcttgttctatctacattttaat 659
Query: 184 atccaatccacggcattaaccagtagttaataataccataca-tttttatattaggtctt 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 658 atccaatccacggcattaaccagtagttaataataccatacattttttatattaggtctt 599
Query: 243 agaagttgaattcctagtattgttgaataaacattcctctgatataatctgagttcaaga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agaagttgaattcctagtattgttgaataaacattcctctgatataatctgagttcaaga 539
Query: 303 ccatttcttcatctccccttccccttcacccataataatattatttcctaaaaatagtat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccatttcttcatctccccttccccttcacccataataatattatttcctaaaaatagtat 479
Query: 363 tgatctttccacaataatattatttcttaaaaataaccacccaaaaatccgtggaacaca 422
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 478 tgatctttccacaataatattatttcttaaaaataactacccaaaaatccgtggaacaca 419
Query: 423 taatctattcatttatgcagtcatactattatgcattatattatctgtaatatgtcatta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 taatctattcatttatgcagtcatactattatgcattatattatctgtaatatgtcatta 359
Query: 483 gtatctgtaacatgttacaaacataagcatgcataattatattatatagctaactgtagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtatctgtaacatgttacaaacataagcatgcataattatattatatagctaactgtagc 299
Query: 543 atatttgtttcttagcatgctttttaaactgaatacttgctttgaacacagtgtaattta 602
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atatttgtttcttagcatggtttttaaactgaatacttgctttgaacacagtgtaattta 239
Query: 603 taacagagaagaaaaatttcacatccttta-tttg 636
|||||||||||||||||||||||||||||| ||||
Sbjct: 238 taacagagaagaaaaatttcacatcctttaatttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1038
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1028
Effective search space: 643528
Effective search space used: 643528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_b12.g1 MSMg01no137_b12.g1 CHROMAT_FILE:
MSMg01no137_b12.g1 PHD_FILE: MSMg01no137_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:40 2005
(642 letters)
>mm_chr6_106043439_106044481
Length = 1043
Score = 1197 bits (619), Expect = 0.0
Identities = 637/643 (99%), Gaps = 1/643 (0%)
Strand = Plus / Plus
Query: 1 atgctagatctggtaatgtcttgcctgtattctggtcacttgggaagggtgagcaggagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atgctagatctggtaatgtcttgcctgtattctggtcacttgggaagggtgaccaggagg 260
Query: 61 tctccaagtttgaggcctgccaaagcataatggcacaaggaagcatcaacccaacaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccaagtttgaggcctgccaaagcataatggcacaaggaagcatcaacccaacaagat 320
Query: 121 gaagttgcttttgatagcccttccaaaagtaactaatggcaaataggttttgtagaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gaagttgcttttgatagcccttccaaaagtaactaatggcaaatagggtttgtagaaatg 380
Query: 181 ttttt-atgtctagtcacctgactctaatagaatgtaatctaactttgatttctgcttgt 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttatgtctagtcacctgactctaatagaatgtaatctaactttgatttctgcttgt 440
Query: 240 atgtattagtttcagacctcggtatatttcagctcaaaatatagcaggcaagcatgcttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtattagtttcagacctcggtatatttcagctcaaaatatagcaggcaagcatgcttg 500
Query: 300 acaatgtacatcaagaggaacttgtctgctgaagaattcctttcttgaacctctcagcta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatgtacatcaagaggaacttgtctgctgaagaattcctttcttgaacctctcagcta 560
Query: 360 tacgcatctcttttattattattattattattattattattattattattattattaatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tacgcatctcttttattattattattattattattattattattattattattattattt 620
Query: 420 cacctaacatccctaaaacagtccccttccctcttttcttccaagtcttaccatgattac 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 cacctaacatccctaaaacagtccccttccctcttctcttccaagtcttaccatgattac 680
Query: 480 cttctctgaggaaaaggggaaaggccccatgggtaccaaacctccttgacacaataatta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttctctgaggaaaaggggaaaggccccatgggtaccaaacctccttgacacaataatta 740
Query: 540 gcagcaagactaagcacatcctctacaactgaggtccaacaagggagtccagttagatga 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 gcagcaagactaagcacatcctctacaactgaggtccaagaagggagtccagttagatga 800
Query: 600 agagaatccaaaggcaggcaacagagtcagagacagcacctgc 642
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agagaatccaaaggcaggcaacagagtcagagacagcacctgc 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space: 652856
Effective search space used: 652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
