Query= MSMg01no137_k23.b1 MSMg01no137_k23.b1 CHROMAT_FILE:
MSMg01no137_k23.b1 PHD_FILE: MSMg01no137_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:28 2005
(648 letters)
>mm_chr6_3442505_3443552
Length = 1048
Score = 1127 bits (583), Expect = 0.0
Identities = 625/649 (96%), Gaps = 20/649 (3%)
Strand = Plus / Plus
Query: 1 ttgtattgactataaacattaggttttacaaagtgacctctatggcagctcagaatagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtattgactataaacattaggttttacaaagtgacctctatggcagctcagaatagtt 260
Query: 61 ggtctttatttcctcattagcacacacattattagcaaacataacatgactattgttgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctttatttcctcattagcacacacattattagcaaacataacatgactattgttgac 320
Query: 121 tgaaaataaactcttgcatcattagaaaaaatagaattttccagtctgtattttgaatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaataaactcttgcatcattagaaaaaatagaattttccagtctgtattttgaatag 380
Query: 181 attatttaattaaacacggaagcttatttttaaaatttttt-aaaggtacaaagaaaatt 239
| |||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 381 actatttaatcaaacacggaagcttatttt-aaaatttttttaaaggtacaaagaaaatt 439
Query: 240 cagtattttaaaagcaaaaggactttcatattacttgtgacccttgtgacttgtcacttc 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 cagtattttaaaagcaaaaggactttcatattacttgtgacctttgtgacttgtcacttc 499
Query: 300 cagagaaagtgaatttcagtaaggagggaggtctttctctataataacaactttattttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagagaaagtgaatttcagtaaggagggaggtctttctctataataacaactttattttg 559
Query: 360 aagttgggaaaaaatcaccattacattttaattaattttattttagtcaaatttctcaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagttgggaaaaaatcaccattacattttaattaattttattttagtcaaatttctcaac 619
Query: 420 tgaattcattcctgaattcttcttaaggccaattacaaaaacattatctgtgaaaaccta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgaattcattcctgaattcttcttaaggccaattacaaaaacattatctgtgaaaaccta 679
Query: 480 tcagtccctctatttaaaaatgagacacacacacacacacacacacacacacacacacac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 tcagtccctctatttaaaaatgagacacacacacacacacacacacacacacatacacac 739
Query: 540 acacacacatatacacaaacagagagagagagagagagagagagagagagagagagaatc 599
| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 740 a----------------aacagagagagagagagagagagagagagagaga-a-agaatc 781
Query: 600 ccaggatcacataatagctaagaatgatgttaaattatggtaacataca 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ccaggatcacataatagctaagaatgatgttaaattatggtaacataca 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_k23.g1 MSMg01no137_k23.g1 CHROMAT_FILE:
MSMg01no137_k23.g1 PHD_FILE: MSMg01no137_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:28 2005
(637 letters)
>mm_chr6_3597348_3598382
Length = 1035
Score = 936 bits (484), Expect = 0.0
Identities = 520/532 (97%), Gaps = 2/532 (0%)
Strand = Plus / Minus
Query: 103 agcatcatatttgtctttttaaaaaataagttttattataagttttggaggcctctaatg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 agcatcatatttgtctttttaaaaaataagttttattataagttttggaggcctctaatg 976
Query: 163 tgatcttatggaatacataaagtgaagcaaatcaatatacacatgaacatatacattcat 222
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tgatcttatggaatgcataaagtgaagcaaatcaatatacacatgaacatatacattcat 916
Query: 223 ttttgtaacaaaagcaagtgaaatcttattttttaaatcctcaaatacaagacaattatg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ttttgtaacaaaagcaagtgaaatcttattttttaaatcctcaaatacaagacaattatg 856
Query: 283 ttaagtatagttgtcatgctgtgtgggctttctcttttattatcttgatgcattcagtgt 342
|||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 855 ttaaatatagttgtcttgctgtgtgggctttctcttttattatc-tgatgcattcaatgt 797
Query: 343 cagtgttccactgccccatcctccttttgggtatacagattgtcccccagtgctcagaaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cagtgttccactgccccatcctccttttgggtatacagattgtcccccagtgctcagaaa 737
Query: 403 agtagaaacatggctctgagaaaatgtaaagtagtaaatatagtaaagtaagaaagtcaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agtagaaacatggctctgagaaaatgtaaagtagtaaatatagtaaagtaagaaagtcaa 677
Query: 463 gacccaaatcagatcaaaaatgtaattctgtccacaagttatcccaagaagcgaaccctg 522
|||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||
Sbjct: 676 gacccaaatcagatcaaaaatgcaattctgcccacaagttatcccaagaagcaaaccctg 617
Query: 523 cccttgtcatctgcaaggaaattcactaaaccttagggacgagatggctacgtatattat 582
|||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct: 616 cccttgtcatttgcaaggaaagtcactaaaccttagggacaagatggctacgtatat-at 558
Query: 583 tctgtctagaagacaatagacatctcaataacagacatcaaatcttccattg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tctgtctagaagacaatagacatctcaataacagacatcaaatcttccattg 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1035
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1025
Effective search space: 642675
Effective search space used: 642675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
