BAC Information

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BAC

Clone NameMSMg01-138L10
Chromosome6 (Build37)
Map Location 72,581,679 - 72,582,032
singlet/doubletsinglet
Overlap geneTcf3
Upstream geneJmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890
Downstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138L10.T7 (MSMg01no138_l10.b1)MSMg01-138L10.TJ (MSMg01no138_l10.g1)
ACCAG344311AG344312
length711704
length of high quality
(start - end)
353 (56 - 408)504 (79 - 582)
definitionCHROMAT_FILE: MSMg01no138_l10.b1 PHD_FILE: MSMg01no138_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:50 2005CHROMAT_FILE: MSMg01no138_l10.g1 PHD_FILE: MSMg01no138_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCAAATCTATAATTGCGGCGCTATACGACTCCTATTCGGAGAGGAGCC
GCGGATTCCTTTCTCCACACTGGCCTTAATTTTATTGGGGACGACAGGGT
AGGGAGGGAAGCCAAAAACTTTCTTAGCTCCTCACAGCCACAAGAACCTG
TCTGAGGACAGATGCATTAGGTCTTAAAGGAAGGGCCATGGCAAATCAAA
GAGAACAGCGTGCGCGGGAGAAGCCAGGGCTTGGACTGCCAGCTGCCAGC
AGGAGAGAAGACCACAGGACACAGGCTGAGCAGAGAGTGGATCACACCCC
TCCCCCCAGAGGGATCTCACTTACTCACTCACTGCAGGGCTCAGGCTGGG
GGCTGCTGGCTCCTGCTTCACAATGGGGGAGACGATGGCAGGGTGGGGGA
TTCCTGATGTGTGCACACCAGGATGTGCAGGAGCCACCATGTGTGGCAAC
CGGTTTGAGACCAGGCTGCGTAACCAGGACACACAAGTGAGAACGTAGAG
GCCAGGCCTGTGTGCCTGCCCACCGAGTGGTTGTTCCCCTGCCGAACTTA
GGCTGGTCTAGTTTGTGTGCCGTCCAATGACCCTGTCCCTTCCCCTATAT
TCATACTGACTTGGTCGTTGTATGTTTGTACACCGCAAAACTCTACTATG
TCTGCCATATCCCTTTTCCTCCTGCCCATTGATTGTTCCCCCTTTCTCTC
CCTATTCTCTC
CCCCNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACTTTTCCCTTACTAATGGA
GCTGGGAGATGACTTTTTTGGGAAAGTGCTTGCCATGCAAGTATGAGGAC
CTGAGTTCAAATCCTCAGTATCCACATATATAAATAGGCACAGCAGTATG
CTCCTGTAATCCTAGTTCTGGAAAGGGGGAGACAGGAGGACCCCTGGGCC
TTGATGGGCATCAGATGAGCCAAATTGAGAGGGTTCACTGAGAGACCCTG
CCTCCAAAAAATAGAGAACCCGAGGAATATATCAGCACTGGACATGGCTT
CTGCATGAATGTCCACACGTGGACGTCGACTTGCACATAGACACATACAC
ATGTACATGCACACACATAGATACATACACAGGTGCCAAAAGAGAAAGAA
GATAGATCATGGCTAGAACCATTACTGAATGTCCAGTTCTGTGTGCAGGT
CATCGACAACAGGCATCTCGGGCTGGAGAGACGGCTCCCCTCTTAGAGAG
CACTTGCTGCTCTTGCAGAGAACAGAGTTTAGTTCCTAGCACCATCATGG
GGCAGTGGGGCATCTCACAGTTGTCATAGTACAAGCTCCAGGTCCCCAGC
ATGTACAAATATACACCTGCTGGCAGATACCTACACTTATCTTAAAACAA
GCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_l10.b1 MSMg01no138_l10.b1 CHROMAT_FILE:
MSMg01no138_l10.b1 PHD_FILE: MSMg01no138_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:50 2005
         (353 letters)



>mm_chr6_72581479_72582233
          Length = 755

 Score =  621 bits (321), Expect = 0.0
 Identities = 346/355 (97%), Gaps = 4/355 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctttctccaca--ctggcctta-attttattggggacgacagggtagggagggaagc 57
           ||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctttctcc-catcctggccttacattttattggggacgacagggtagggagggaagc 259

                                                                       
Query: 58  caaaaactttcttagctcctcacagccacaagaacctgtctgaggacagatgcattaggt 117
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 caaaagctttcttagctcctcacagccacaagaacctgtctgaggacagaagcattaggt 319

                                                                       
Query: 118 cttaaaggaagggccatggcaaatcaaagagaacagcgtgcgcgggagaagccagggctt 177
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 320 cttaaaggaagggccatggcaaatcaaagagaacagcgtgcacgggagaagccagggctt 379

                                                                       
Query: 178 ggactgccagctgccagcaggagagaagaccacaggacacaggctgagcagagagtggat 237
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 ggactgccagctgccagcaggagagaagaccacagggcacaggctgagcagagagtggat 439

                                                                       
Query: 238 cacacccctccccccagagggatctcacttactcactcactgcagggctcaggctggggg 297
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 440 cacacccctccccccagagggatctcacttacgcactcactgcagggctcaggctggggg 499

                                                                  
Query: 298 ctgctggctcctgcttcacaatgggggagacgatggcagggtgggggattcctga 352
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgctggctcctgcttcacaatgggggagacgatggcagggtgggggattcctga 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 755
Length adjustment: 9
Effective length of query: 344
Effective length of database: 746
Effective search space:   256624
Effective search space used:   256624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)