Query= MSMg01no139_o07.b1 MSMg01no139_o07.b1 CHROMAT_FILE:
MSMg01no139_o07.b1 PHD_FILE: MSMg01no139_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:26 2005
(645 letters)
>mm_chr6_70670560_70671604
Length = 1045
Score = 1176 bits (608), Expect = 0.0
Identities = 634/644 (98%), Gaps = 4/644 (0%)
Strand = Plus / Minus
Query: 4 ggaattctggtccatctatttttaattgacaagcactcatcagacatttgcagaataaat 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ggaattctggtccatttatttttaattgacaagcactcatcagacatttgcagaataaat 786
Query: 64 gaaaaaaaaaagcaat--aaaaaagccaatagtatagatcagtgatagtaatctacaaca 121
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 g--aaaaaaaagcaataaaaaaaagccaatagtatagatcagtgatagtaatctacaaca 728
Query: 122 gacaaaaggttagtactgacctctacaagaatcaactttcttagaaaaattgcaactcta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gacaaaaggttagtactgacctctacaagaatcaactttcttagaaaaattgcaactcta 668
Query: 182 accaagattagagaggtctacttgtttatgttattagggttttgctaatctggaatggca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 accaagattagagaggtctacttgtttatgttattagggttttgctaatctggaatggca 608
Query: 242 gattctacatgtgtttcaccagaagatggagaaagaaaagaatcaagtaggaaatagaaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gattctacatgtgtttcaccagaagatggagaaagaaaagaatcaagtaggaaatagaaa 548
Query: 302 gaaaagagaaattgtcaataaaacttaactatgtaaagtagctgatgatctcaattaaca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gaaaagagaaattgtcaataaaacttaactatgtaaagtagctgatgatctcaattaaca 488
Query: 362 tggatcgtaaagagaatgaaaagtgatttttctctgtagttatggaagcgatatcaacca 421
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tggatcataaagagaatgaaaagtgatttttctctgtagttatggaagcgatatcaacca 428
Query: 422 taaaaattgatgtttgttgagaacttataaaatgccagacatcatatatggctcattata 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taaaaattgatgtttgttgagaacttataaaatgccagacatcatatatggctcattata 368
Query: 482 tttagctatccataagactctatgaactagaaattaatattgtatgtctgtgacattaaa 541
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 367 tttagctatccataaaactctatgaactagaaattaatattgtttgtctgtgacattaaa 308
Query: 542 gaacaaagcttagacttaaatctgctgtttatgcacttagtgcacagttatcagagtaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 307 gaacaaagcttagacttaaatctgctgtttatgcacttagtgcacagttattagagtaga 248
Query: 602 cacgagagacaaaattaccgaataggagcagcatgcatgtaaga 645
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 247 cacgagggacaaaattaccgaataggagcagcatgcatgtaaga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_o07.g1 MSMg01no139_o07.g1 CHROMAT_FILE:
MSMg01no139_o07.g1 PHD_FILE: MSMg01no139_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:26 2005
(604 letters)
>mm_chr6_70543216_70544225
Length = 1010
Score = 588 bits (304), Expect = e-172
Identities = 536/616 (87%), Gaps = 22/616 (3%)
Strand = Plus / Plus
Query: 1 tttttcctaatctgtttaaaacctccactcttaatacatcatgagagatatcacagaaaa 60
||||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 201 tttttcctaatctattttaaacctcctctcttaatacatcatgagagacatcacagaaaa 260
Query: 61 aattttcattcacttcatctaggaacatttactcttctttcataactacttaatg-aaac 119
||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct: 261 tgttttcattcacttcatctacgaacatttactcttctttcataactacttaa-gcaaac 319
Query: 120 caagtagcaaagctcctctgctagaaagagacaatatggc-cgaaatccatcccactagt 178
||||| ||| || |||||| ||||||||||||| | |||| | ||| |||||||||||||
Sbjct: 320 caagtggcacagttcctcttctagaaagagacattctggcac-aaacccatcccactagt 378
Query: 179 cttgtgtcttcacagcaggctatttacttgactgtcattggaaaaataataatgtagagc 238
|||||| |||||||||| ||||||||||| || ||||||| ||||||| ||| | |||
Sbjct: 379 cttgtggcttcacagcaagctatttacttttctatcattggcaaaataacaatccatagc 438
Query: 239 tttcaataacacagaagaaatttcccgtgcctccaatt-catctctagcaccacatttct 297
||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||
Sbjct: 439 tttcaataacacagaagaaattttccatgcctccaatttcatctctagcacaacatttct 498
Query: 298 ttcgatcatcaaaggcaacatcctcaaaaatggtaatcttagaaggaatttgcaatcata 357
||| ||||||||||||| |||||| ||||| ||||||||||||| ||||| || |||
Sbjct: 499 ttccatcatcaaaggcagcatccttgaaaattgtaatcttagaagtaatttaaaaaaata 558
Query: 358 atagataactta--gtcacaagttctcaa-gtcaaacaac-aac--ccctgtaacatttc 411
|||||| ||||| |||||| |||||||| ||| || | || ||||| ||||| ||
Sbjct: 559 atagatgacttaaagtcacaggttctcaaagtc---catcgaatgtccctgcaacatctc 615
Query: 412 attgatgggtgtttgaaagaccaatgaataatggaggtgagtaaaggcctcctcctcatt 471
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aatgctgggtgttcaaaagaccaatgaataatggaggtgagtaaaggcctcctcctcatg 675
Query: 472 agccaggccatagttcctccttacttagga-gatcccatccc-tatcctttgttaacaca 529
|||||||||| ||||||||||||| | ||| | ||||| ||| |||||||||||||||||
Sbjct: 676 agccaggccagagttcctccttacct-ggaagctcccaacccctatcctttgttaacaca 734
Query: 530 aatctctgagagcaccaaatg-ctca-atgtcataaattgaaagggtg-cctattttgca 586
|||||||||||| |||||||| |||| || |||| ||| | |||||| ||| |||||||
Sbjct: 735 aatctctgagaggaccaaatggctcagat-tcattgatttacagggtgtcct-ttttgca 792
Query: 587 tacttttacaccctga 602
|| |||||||||||||
Sbjct: 793 tatttttacaccctga 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1010
Length adjustment: 10
Effective length of query: 594
Effective length of database: 1000
Effective search space: 594000
Effective search space used: 594000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
