CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCCGCGGAAT
TCCCATAAGCATGTCGCTAAGGTCAACACAGAAATTACTAAGTATACTTT
ANAAAATAATTTTTGTAGTGCATCAGTAGTCAAATAATGTAATTTAATAT
TTATTGAGTACTTANTGTGTATCAAGCACTAGATAATCATATATATGGAT
GCTCTGAGTATTATATGACATGTACACACTCTGTGTGTGTGTGTCTGCAA
ACTTTGTTTCCCCTANAAAATTTTTTGATTTTTGACATTAAATTTATTTA
TGTATATAAAAAAACCTTGGTTAATTTCCCTCCTTCCCCGGTATTTAATT
CCCAATGGNNNGAATATCAGAGAAAGGGGGGGGGCGAAAGGAAGGAAACA
AAAAGCTGAACAGGAGGGAAAAGCCCAGAGAGAGAAGGACTGGGATTCTN
CNNNTTTGTTTTAAAGAGGGGGGNNAATCTGNTCTCTGTGTTAAAAAATT
TTTTATTCTCATAAAGATATAACACAACCTTCTAAGAGGGGGGGGGGNNN
NTATTTTTTTTTTTTTTNNTTTTCCCCTCCCTTTTTTCTCTTGTCCCCCT
TCTTCGGTTGGTGCCGCGTTTTCCCCCCTCCTTTTTTTCTCCCCCTCCGC
TCTTCCTCCCTTCCTTTTTTTTTCTTTTCCTCTTCNNNCTTTTTNNCTCT
TTGTGGGGCTCCCCTTTTTTTCCCCTCTCCCTTTTCCCCTTTTTTCCCCC
TTTNNGCCGGGTCTTCCCTTTTCTTTAGAAGAGAAAAAAACCAAAG

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCTGTTCTCAGGCACATATAATTTT
GAAGTAACAGATGAAATAGTATCTTTTTTGCTTTCTGTGATGAAAGGTAG
AAAGAATCTTGGGCCATTACTTAGCTCCAGCCTTCCCTTCATTTTGTACA
GGTTAGAAATTTTATAAGAAAGAACGTTCAGTACTCATAGACTGTGACTC
TCCAGTCTCTCCCTGTTAAAAATTTCACAAACTGATTTTAGTGGTTTTTT
TATTTAATGAGTCTCAGAAATTTTTTCTAGAATGCTGTTCTAGGGTGTCA
CCTCATCAATAAGACATAGCATAGCAGCTATAGTTGCTTTCCACTCTTCA
ACTGCATGATCTCTAAATTACATTTTCAACCCGATATATTTTTCTATTGT
TTGATGATTCCTATTTTGATCATGTATAGCTATTTCAATTACTCCTGCTA
ATATGTGCAATAGAATGGTTATACTTAACAGTTACCTTAAAATAATTTCT
AAGTCATCTATGTGTTACATATAGAAAGAGATAAAAATGATAATAAAATA
GTGACCAAATGCAGCAATACATAGATATAATATCAGCATTTGGGATACTG
AACCAGACAACTCATAAGTTCAGGGCCATCTCTAACTAAAATTTTGCCAG
GCTGAAGGCTGN

Query= MSMg01no140_a20.g1 MSMg01no140_a20.g1 CHROMAT_FILE:
MSMg01no140_a20.g1 PHD_FILE: MSMg01no140_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:39 2005
         (540 letters)



>mm_chr6_63856004_63856943
          Length = 940

 Score = 1025 bits (530), Expect = 0.0
 Identities = 536/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctgttctcaggcacatataattttgaagtaacagatgaaatagtatcttttttgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctgttctcaggcacatataattttgaagtaacagatgaaatagtatcttttttgctt 260

                                                                       
Query: 61  tctgtgatgaaaggtagaaagaatcttgggccattacttagctccagccttcccttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tctgtgatgaaaggtagaaagaatcttgggccattacttagctccagacttcccttcatt 320

                                                                       
Query: 121 ttgtacaggttagaaattttataagaaagaacgttcagtactcatagactgtgactctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtacaggttagaaattttataagaaagaacgttcagtactcatagactgtgactctcc 380

                                                                       
Query: 181 agtctctccctgttaaaaatttcacaaactgattttagtggtttttttatttaatgagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctctccctgttaaaaatttcacaaactgattttagtggtttttttatttaatgagtc 440

                                                                       
Query: 241 tcagaaattttttctagaatgctgttctagggtgtcacctcatcaataagacatagcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagaaattttttctagaatgctgttctagggtgtcacctcatcaataagacatagcata 500

                                                                       
Query: 301 gcagctatagttgctttccactcttcaactgcatgatctctaaattacattttcaacccg 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 gcagctatagttgctttccactcttcaactgaatgatctctaaattacattttcaacccg 560

                                                                       
Query: 361 atatatttttctattgtttgatgattcctattttgatcatgtatagctatttcaattact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatatttttctattgtttgatgattcctattttgatcatgtatagctatttcaattact 620

                                                                       
Query: 421 cctgctaatatgtgcaatagaatggttatacttaacagttaccttaaaataatttctaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgctaatatgtgcaatagaatggttatacttaacagttaccttaaaataatttctaag 680

                                                                     
Query: 481 tcatctatgtgttacatatagaaagagataaaaatgataataaaatagtgaccaaatg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatctatgtgttacatatagaaagagataaaaatgataataaaatagtgaccaaatg 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)