BAC Information

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BAC

Clone NameMSMg01-140C10
Chromosome6 (Build37)
Map Location 94,234,727 - 94,234,962
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043253, LOC665831, Magi1
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140C10.T7 (MSMg01no140_c10.b1)MSMg01-140C10.TJ (MSMg01no140_c10.g1)
ACCAG345369AG345370
length746727
length of high quality
(start - end)
236 (71 - 306)70 (214 - 283)
definitionCHROMAT_FILE: MSMg01no140_c10.b1 PHD_FILE: MSMg01no140_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:47 2005CHROMAT_FILE: MSMg01no140_c10.g1 PHD_FILE: MSMg01no140_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAGAGCGCGGA
ATTCGCCGCCTATACCAGGGGTGCAGTAATCGGGGCACTGGTGAGGCCAA
GACAGAAAGAACAGCCCCCACCGCCAAGAAGCCAGTGCAGTGGTGGCCCT
AGCGGTTTTGTTTATTTTTCAGTGGTTTCCAATGAGTTCCTCTTTGGTCA
CAGACTTGAGAATCTACTAGATAAAAGGAGCTGAGTTGGAGCCAGAGAGA
TGAGGATGTCACTGAGGTGGGTAGGAGAGAATAGGTCTGAAGTTCATATT
CCGCAGGTATCTTAAGTACAATATTTTGTGAATACCTTCCACTTGCCATG
GCTGGAGGAATACTATCACCCCCACCCCCACCCTATTCCTTTACCTTATC
CCCCAATTTCTATCCCCTCCTTTTTTTTTTTTTTATCTTCCGCTTCTTTC
TTTCTTCATCTCCATCGTTTTTCTTCTTTCTTTTTTCCTTTCCCCCCCCT
CTCTTTTATCATCTTCTTTTTTCCCCTTTTTTTTTTTCCGTTTATCCCTT
TTCCTCTATTTCCATCCTCCCACTTTTTTTCCTTCCATTTTTTTTTTTTT
TCCCCCGTTCATTCTATTATTTTTTTTCTTTACCCTTTTTTCTTTTACCT
CATTTCTTTTCTTCCCTTTTTTCCCCTTTTTCTTTTCCCCTTCTTTCCCC
CCTTTTTCGCTTTTTTCTTCCTTCTTCCCCTCTTTTTTCTCCCTTT
AATGTAGTGATAGGCCTGGTGGTCGCCTGTCTTTCAAATTTAGGTGAACT
ATATAAGGATCCCCGTAATTCTAGAAAGTCTTCCATTTCTTTCTTCATTT
CTTCCTTGACTCATTGGTTGTTGATTAGGAAGTTGCTCAGTTTCATTGAG
TATGTATGTATGCTTTCTGTCGCTTCTGTTTTTGTTTAAATCCGCCATGG
TGGTCTGATAATATTGAATTTTAATTTTAATTTTCTTTTTTTAATTTTAA
TTTCCTTTTATCTGCTGAGACTTGTTTTGCAACCATCTTTGCAGAAGGCG
CTGATAACGCATATTCTTTTATGTTTGCGTGAAGACTCCTATATATCTCT
TATGTCTATTTGACTCACAGCTGCTGCTAGTTTCATCTATTTCTTTGCTT
CACCTCCTGTCTGGACAACTAGCTCATTGCTAAATTGCTCTCTGTCTCTC
TCCTCTTCTATCTTTCTATCTCTTCTCCTCCTACTCTTACTCTCTTGCAT
CTTCTTCTACTCTTCTTTTCTCTCACTCTTCTTACTCTTCATCTCCTCAT
TACTCTCTTCCTCTTCTCATTCTCATCTTCTCTTCTTCTTCATCCTTTCT
TCATCTCCTTCACTTCCTCACTCCTTCTTCTCCCTCATCTCTTTCTTTCT
TTTCCTCATACTCTTCTTCTTCCTTCTCTTCTTCATCCTTCCCTTTTATT
TTCTTCATCCTCCCTACTCTACCATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_c10.b1 MSMg01no140_c10.b1 CHROMAT_FILE:
MSMg01no140_c10.b1 PHD_FILE: MSMg01no140_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:47 2005
         (236 letters)



>mm_chr6_94234524_94235162
          Length = 639

 Score =  385 bits (199), Expect = e-111
 Identities = 226/237 (95%), Gaps = 5/237 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   cagtaatcggggcactggtgaggccaagacagaaagaacagcccccaccgccaagaagcc 63
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 204 cagtaatcggggcactggtgaggccgggacagaaagaacagcccccaccgccaagaagcc 263

                                                                       
Query: 64  agtgcagtggtggccctagcggttttgtttatttttcagtggtttccaatgagttcctct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgcagtggtggccctagcggttttgtttatttttcagtggtttccaatgagttcctct 323

                                                                       
Query: 124 ttggtcacagacttgagaatctactagataaaaggagctgagttggagcca----gagag 179
           |||||||| ||||||||||||||||||||||||||||||||||||||||||    |||||
Sbjct: 324 ttggtcacggacttgagaatctactagataaaaggagctgagttggagccactcagagag 383

                                                                    
Query: 180 atgaggatgtcactgaggtgggtaggagagaataggtctgaagttcatattccgcag 236
           ||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||
Sbjct: 384 atgaggatgtcactgaggtgggtcg-agaggataggtctgaagttcagattccgcag 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 639
Length adjustment: 9
Effective length of query: 227
Effective length of database: 630
Effective search space:   143010
Effective search space used:   143010
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)