Query= MSMg01no140_g13.b1 MSMg01no140_g13.b1 CHROMAT_FILE:
MSMg01no140_g13.b1 PHD_FILE: MSMg01no140_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:08 2005
(438 letters)
>mm_chr6_138819145_138819982
Length = 838
Score = 543 bits (281), Expect = e-159
Identities = 345/395 (87%), Gaps = 44/395 (11%)
Strand = Plus / Plus
Query: 6 ggaattccagtctttctggctgtgatagatattctgagtagcaaaataaaaggtacattc 65
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 206 ggaattccagtcttcctggctgtgatagatattctgagtagcaaaataaaatgtacattc 265
Query: 66 aacatagctctctgctgatgcttgcaggaacctaatgtttcttgttacctatggtgactg 125
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 266 aacatagctctctgctgatgcttgcaggaaccaaatgtttcttgttacctatggtgactg 325
Query: 126 ggcagataatgggtgtatgccatgtatatatgaggcaaataatgctatacacacacacac 185
|||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 326 ggcagataatgggtgtgtgccatgtatatatgaggcaaataatgcta------------- 372
Query: 186 acacacacacacacacacacacacacacacacacacacacacacatggtttgtggattgt 245
|||||||||||||||||||||||||||||
Sbjct: 373 -------------------------------cacacacacacacatggtttgtggattgt 401
Query: 246 gaattattcaatgccataaaatggtctgttttctataaccaataattcattatctataaa 305
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 402 gaattattcaatgccataaaatggtctgttttcaataaccaataattcattatctataaa 461
Query: 306 acagcagcttccctagcaggcgtatgttggagtgttgggatgctactctcagccatggca 365
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 462 acagcagcttccctagcaggcgtatgttggagtgtttggatgctactctcagccatggca 521
Query: 366 aaccaatgtacacttctacctgtttatatatatat 400
|||||||||||||||||||||||||||||||||||
Sbjct: 522 aaccaatgtacacttctacctgtttatatatatat 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_g13.g1 MSMg01no140_g13.g1 CHROMAT_FILE:
MSMg01no140_g13.g1 PHD_FILE: MSMg01no140_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:08 2005
(639 letters)
>mm_chr6_138983315_138984353
Length = 1039
Score = 1178 bits (609), Expect = 0.0
Identities = 628/639 (98%), Gaps = 8/639 (1%)
Strand = Plus / Minus
Query: 1 tctgtagctataaagaaaagaagtgaagacatgggattgcaagggaaatagaaggaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tctgtagctataaagaaaagaagtgaagacatgggattgcaagggaaatagaaggaactt 815
Query: 61 gaaaaattttatatggagtgaggtaaaccaaaccgaggaaaacaaacaaacaaacaaaca 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 814 gaaaaattttatatggagtgaggtaaaccaaaccgagga--------aaacaaacaaaca 763
Query: 121 aacaaacaaacaaaaaacaaaacacttcttctctttagtttgtgggagaatttttagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aacaaacaaacaaaaaacaaaacacttcttctctttagtttgtgggagaatttttagaag 703
Query: 181 tgagaacataaatgggagaattcaaagaatggaggtgagcttgggggacaacactgaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 702 tgagaacataaatgggagaattcaaagaatggaggtgagcttgggggaccacactgaaca 643
Query: 241 gaatgtcacaaaacaaagttcttcaaatattaacaaaacatggagaaaaaaactttagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaatgtcacaaaacaaagttcttcaaatattaacaaaacatggagaaaaaaactttagaa 583
Query: 301 cccctttaaattcccttaaatcatacataaaattagcacaactgatgttaggtttcactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cccctttaaattcccttaaatcatacataaaattagcacaactgatgttaggtttcactg 523
Query: 361 tttttaaaatatgataataataccagtttatctgctggaggattaatttttaaattctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tttttaaaatatgataataataccagtttatctgctggaggattaatttttaaattctgc 463
Query: 421 atttttctatgagagtgacacaaaatgttggatctggattcaaagagaattctatttgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atttttctatgagagtgacacaaaatgttggatctggattcaaagagaattctatttgca 403
Query: 481 ctgaattttctactcaaacttaattctacactgcctcacacaactttgatattttttttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctgaattttctactcaaacttaattctacactgcctcacacaactttgatattttttttc 343
Query: 541 gttttttttattggatattttcttcatttgcatttcaaatattatcttctttctcacttc 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 342 gttttttttattggatattttcttcatttgcatttcaaatattatcctctttctcacttc 283
Query: 601 cccgcccccctccggaaacccccatcctatctcctcttc 639
||||||||||||| |||||||||||||||||||||||||
Sbjct: 282 cccgcccccctccagaaacccccatcctatctcctcttc 244
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
