BAC Information

Click to search

BAC

Clone NameMSMg01-140I01
Chromosome6 (Build37)
Map Location 137,610,463 - 137,610,706
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg, Ptpro, Eps8
Downstream geneStrap, Dera, 9830102E05Rik, Mgst1, Lmo3, Igbp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140I01.T7 (MSMg01no140_i01.b1)MSMg01-140I01.TJ (MSMg01no140_i01.g1)
ACCAG345620AG345621
length719702
length of high quality
(start - end)
393 (48 - 440)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no140_i01.b1 PHD_FILE: MSMg01no140_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:15 2005CHROMAT_FILE: MSMg01no140_i01.g1 PHD_FILE: MSMg01no140_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGNAATCTATAATTGCGGCGCTAAACGACTCCTATTTCGAGAGGATCC
GCGGAATTCTATTTTGTTCTATTTTATTGAGAATTTTTTGGATCTATGTT
CATCAAGGAAACTGATTTATAGTTCCATTTCTGTTATGTCCTTCTCCAAT
TTTATTATCAGAATAATACTGACTTCATAAAAAGAGTTTGATAGTGTTCT
TTCTCTTTCTGCTTCTGGGGCAGCATGCGGGAGCCTTTTAAGGGCTAATA
GAACTCAGAAGTGAATCCAATAATACATTCCTGGGCTCTCTTCTGCTTGA
AGACTTGAAAATGGCTTCGAACTCATTGTTCTCTTCCCCGCCCCCCCTCT
CTCTATATATATCCCTCTCTCTCTCTTTCTCCCTCCCTCTCTCTCTCCAT
ATAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTTTACCCCT
TTTCTCCTTTTCCTTACTTTATTTAACATTTCCTTTTCTCCCCTTTTTCC
TCTTTTTTTCTTCCTCTTCCCTTTTCAATCCACTGCCCCCTCCCCATTCC
CTTTTTAATCTTACTACCCTTTTTTCCTTTCTCATATTTATTTCCTTTCC
TTTCTAATTACTGTCTTTATTATCCCATTTCCCTTAGTCTTATTTTCTTT
TCACCCCCCCTTTATCCTCGCCCACCTTCCATCCTTCTCTCTTTTCCCCT
CGCCCTCCCCCCCTTTTCC
CCTTCCTCATGAAGTGGTAGCCTGGCGGCCGCCTGAATCGGACTAGAGGT
GACCTATAGAAGATTCGAAAAAATCCTCATCCCGCGTGCTTCACACTTGC
TCCCCGAAAACACAAAACAGCTTCTGCCGCTCCTGGTGGCTTAGTTACTA
GACCATCCTTTGCCACATCTGCCTCTCCGCCTCTTCCCCGTTGTCTACAG
AGTGGCTCTTCCATTGCATTTAGTGATCGCAAAAGCACCATCTTCCTTTG
GAAGTTGGGGGACTGGGTTTCAATCTAGACACTCTCTCTGATGGAGAGTT
CCCCCCTCTGTGCCTCATCGTTTTTTTTAAGGGCTAGAGACAAGACTGGG
TGGGCAGAATGTTAGGGTGGCAATCTGCAGTGCTCCATGAACCAGGCACA
GAAGTGTGTGCCTGTAACCACAGCAGTGGGGTGATGGAGGCAGGGGGATC
AGAAGCTCAAAGTCACCCTCAGTGAAACAGTGAAGTTCATTCGGAGCTGT
TTAAAACAGACACCACACCCCCACCCGCACATGCGCGCGTACGCATACAC
AGAAATATCGGAGAAACACTCAGAATCGACATACACATCCGTACACACAA
CAAATAAATATACATTTTTTTTTAATGTAACGACACTCTGCGCTCTTAAG
GTGTATTCTCTTACTATCCTCTGCAGAATTATTCTCACCCCATTTCCATA
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_i01.g1 MSMg01no140_i01.g1 CHROMAT_FILE:
MSMg01no140_i01.g1 PHD_FILE: MSMg01no140_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:15 2005
         (244 letters)



>mm_chr6_137610263_137610906
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcccgcgtgcttcacacttgctccccgaaaacacaaaacagcttctgccgctcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcatcccgcgtgcttcacacttgctccccgaaaacacaaaacagcttctgccgctcctgg 385

                                                                       
Query: 61  tggcttagttactagaccatcctttgccacatctgcctctccgcctcttccccgttgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggcttagttactagaccatcctttgccacatctgcctctccgcctcttccccgttgtct 325

                                                                       
Query: 121 acagagtggctcttccattgcatttagtgatcgcaaaagcaccatcttcctttggaagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acagagtggctcttccattgcatttagtgatcgcaaaagcaccatcttcctttggaagtt 265

                                                                       
Query: 181 gggggactgggtttcaatctagacactctctctgatggagagttcccccctctgtgcctc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggggactgggttccaatctagacactctctctgatggagagttcccccctctgtgcctc 205

               
Query: 241 atcg 244
           ||||
Sbjct: 204 atcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)