Query= MSMg01no141_j01.b1 MSMg01no141_j01.b1 CHROMAT_FILE:
MSMg01no141_j01.b1 PHD_FILE: MSMg01no141_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:06 2005
(307 letters)
>mm_chr6_13662679_13663385
Length = 707
Score = 532 bits (275), Expect = e-155
Identities = 299/307 (97%)
Strand = Plus / Minus
Query: 1 accctttaaatctcactcctgggcttcagccaatgagaagagttatatcttcaatctggg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 507 accctttaaatctcactcctgggcttcagccaatgagaagagttatgtcttcaatctggg 448
Query: 61 agctaaagacagaaaggtcaaaataagggcagattttttgccaacccacgcaaccatacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agctaaagacagaaaggtcaaaataagggcagattttttgccaacccacgcaaccatacg 388
Query: 121 tgaaccgttctgtcttccagatgacagagccaaacaagtgaaggtcatacaaaattaagt 180
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 387 tgaacccttctgtcttccagatgacagagccaaaccggtgaaggtcatacaaaattaagt 328
Query: 181 gaatcctactcctgagtcactgtgccctggaatccggatgttccttgctaagcaccaggc 240
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 327 gaatcctattcctgagtcactgtgccctggaatccagatgttccttgctaagcaccaggc 268
Query: 241 tctgatatagaaatgataaagttctgtctgcacacgtggggaagcactcatgaacgcagt 300
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 267 tctgatatagaaatgataaagttctctctgcacacgtggggaagcactcatgaatgcagt 208
Query: 301 gtaccgt 307
|||||||
Sbjct: 207 gtaccgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_j01.g1 MSMg01no141_j01.g1 CHROMAT_FILE:
MSMg01no141_j01.g1 PHD_FILE: MSMg01no141_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:06 2005
(712 letters)
>mm_chr6_13493256_13494367
Length = 1112
Score = 1224 bits (633), Expect = 0.0
Identities = 689/713 (96%), Gaps = 11/713 (1%)
Strand = Plus / Plus
Query: 1 agttctttgattttatgcctttttgtcctagcaattaatgaaaataccaaacaaaagcct 60
|||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 201 agttctttgattttgtgcctttttgttctagcaattaatgaaaataagaaacaaaagcct 260
Query: 61 agtt-taaaaactgtgttactttaatgatgtatagatattttatgatggtgtcttggtat 119
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattataaaa-ctgtgttactttaatgatgtatagatattttatgatggtgtcttggtat 319
Query: 120 ctctggtgatattaacttccatttttgtcttatattaatgtatctattccaggtacgtta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctctggtgatattaacttccatttttgtcttatattaatgtatctattccaggtacgtta 379
Query: 180 attcctttttatttataaccagttgtgccttggaatgtatattatatatatttttatcca 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attccttttgatttataaccagttgtgccttggaatgtatattatatatatttttatcca 439
Query: 240 atttaagaatctctgcttttagctgggtgtggtggcacacgcctttaatcccagcactca 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttaagaatctctgcttttagccgggtgtggtggcacacgcctttaatcccagcactca 499
Query: 300 ggaggcagaggcaggcggatttcagagtttgagtctacagagtgagttccaggacagcca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggaggcagaggcaggcggatttcagagtttgagtctacagagtgagttccaggacagcca 559
Query: 360 gggcaacacagagaaaccctgtctcagacaaaaaaaaaaaaaaaaaaaaaaaagaatctc 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 560 gggcaacacagagaaaccctgtctcaga---------aaaaaaaaaaaaaaaagaatctc 610
Query: 420 tgcttttttattgttgtatgatcatacttgatagttactgatttctttaagaatacattt 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 611 tgcttttttattgttgtatgatcatacttgatagctactgatttctttaagaatacattt 670
Query: 480 gctcttttctgcctgtcatacaaatgtttgtgcatttcatatctgttccttctaacaacc 539
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 671 gctcttttctgcctgtcatacaaatgtttgtgcatttcatatatgttcctcctaacaacc 730
Query: 540 ttcttatgagtcagaatttttagtgtagtgtttcaacacctatcactttataatgtcagt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttcttatgagtcagaatttttagtgtagtgtttcaacacctatcactttataatgtcagt 790
Query: 600 gttgtgtgtgttcacatgccacacacgtttgtgcagatgtcagaggacatctgtggagtc 659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 791 gttgtgtgtgttcacatgccacacacgtttgtgcagatgtcagaggacaactgtggagtc 850
Query: 660 aattctctctttctcctttgtgtgcagtccagggatcaaatcaggtcactggc 712
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 851 cattctctctttctcctttgtgtgcagtccaggggtcaaatcaggtcactggc 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space: 773604
Effective search space used: 773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
