BAC Information

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BAC

Clone NameMSMg01-143J04
Chromosome6 (Build37)
Map Location 28,946,330 - 28,946,614
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367
Downstream geneLep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143J04.T7 (MSMg01no143_j04.b1)MSMg01-143J04.TJ (MSMg01no143_j04.g1)
ACCAG347883AG347884
length698705
length of high quality
(start - end)
365 (36 - 400)285 (127 - 411)
definitionCHROMAT_FILE: MSMg01no143_j04.b1 PHD_FILE: MSMg01no143_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:10 2005CHROMAT_FILE: MSMg01no143_j04.g1 PHD_FILE: MSMg01no143_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGTACAATACCGAATGGCAGAGAAGCACCTCAAAAAATGCTCAGCATCCT
TAACCATCAGAGAAATGCAAGTCAAAACAACCCTGAGATTCCATCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATATGGAGAAAGAGGAACACTCCTTCATTGTTGGTGGGATTGCAAGC
TTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAC
ATAGTACTACTGGAGGATCCTGCAATACCTCTCCTAGGCATATATCCAGA
AGATGTCCCAACTGGTAAGAAGGACACATGCTCCAATATGTTCATAGCAG
TCTTACCCCCCCATAGTTAGAAGTTGGATAGAATCCCGATGCCCCTCAAT
AGAGGAATGGATACCAAAAATATGGTACATTTACACTGTGGAGTACTACT
CTCCTATTATAAAGACCGATTTTATGCACTTTCTAGGCCAATGGCTGTAT
CTGCAGCTTATCATCCTTGAGTGTGGTCTTTTTTTCCTCCCCAGATATGA
CTTGATTTGTTCTTCTTGTTTTTTTTTTTTTACTCCTTAATCCTCCACAT
TCCTATGATTTTTGTAGATTTTTTTTTTTTTCCTTTCTTCTGCTTATT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTGGACTATATCTTGGGTATTCTGTGTG
GTTTTGTTGTTGTTGTTGCTGACACAAGAATTTTATAATTACAACGGAAG
GGGAAAACCGATTGCAATAGCAATAAAGACGCAAGCATCATATGAGGAAT
TTACAACATTCCTGAGGGTCACAATAGAAGGAGCTTCAAAATAGAAATGA
AAAGTCTCATTCTTTACTTGGAAATTGCTTATCCAAAGTATTACAACGAT
GCTCATTCTTCTTAAATTATGCGTGATATTTAATTAACTGGGTATCTTTT
ATTCTTGGACTCTGACAGGTTTATTCTTAAGTGTTTGTGAAAAAAAATAC
AAACACTCACACACCCTCCAGGAAATTTAGTCACCTCAGAAGAGATCCGC
TCACTTTTTTGTGAAAACATAATTAAAATAAAGAAGTACTGCAAAACATT
CAGTCAGAGCAGCAGAGGGAATGAGGCGTTCACAAGGAGACCCAGATTAC
TACAGGAAGCTAGCGTTTCTTGAAATGTCATCTCTACCGGAGCCGTTCAC
ACCACCTGTTCAGCCCGGACGGCCCCTAAAGCCGGGCCCGCATTTCGCCG
TAAAACTGATTTCGATTTCCGTCTTCCCCCCCCCCCCATCACCTACTTCC
CCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_j04.g1 MSMg01no143_j04.g1 CHROMAT_FILE:
MSMg01no143_j04.g1 PHD_FILE: MSMg01no143_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:10 2005
         (285 letters)



>mm_chr6_28946130_28946814
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaattttataattacaacggaaggggaaaaccgattgcaatagcaataaagacgcaagc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 agaattttataattacaacggaagggaaaaaccgattgcaatagcaataaagacgcaagc 260

                                                                       
Query: 61  atcatatgaggaatttacaacattcctgagggtcacaatagaaggagcttcaaaatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatatgaggaatttacaacattcctgagggtcacaatagaaggagcttcaaaatagaa 320

                                                                       
Query: 121 atgaaaagtctcattctttacttggaaattgcttatccaaagtattacaacgatgctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaaagtctcattctttacttggaaattgcttatccaaagtattacaacgatgctcat 380

                                                                       
Query: 181 tcttcttaaattatgcgtgatatttaattaactgggtatcttttattcttggactctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttcttaaattatgcgtgatatttaattaactgggtatcttttattcttggactctgac 440

                                                        
Query: 241 aggtttattcttaagtgtttgtgaaaaaaaatacaaacactcaca 285
           ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 aggtttattcttaagtgtttgtgaaaaaaaacacaaacactcaca 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)