BAC Information

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BAC

Clone NameMSMg01-143L10
Chromosome6 (Build37)
Map Location 105,133,582 - 105,133,945
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6, LOC384470
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143L10.T7 (MSMg01no143_l10.b1)MSMg01-143L10.TJ (MSMg01no143_l10.g1)
ACCAG347988AG347989
length694710
length of high quality
(start - end)
369 (43 - 411)427 (72 - 498)
definitionCHROMAT_FILE: MSMg01no143_l10.b1 PHD_FILE: MSMg01no143_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:20 2005CHROMAT_FILE: MSMg01no143_l10.g1 PHD_FILE: MSMg01no143_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCTATGCCGTGACCTTTCTTACATTGTATTAAGGTGCATCTCTCTAT
TTTCAATTGCAAATTCTATGCTAACAGAGGGCTAACTGGTGGAAGAATTT
TGGTGTTGCCATTTCTATGGCCCAAAACAGGCTTTATATTTGTGAATATT
TGTCCTTTCGTGCCTGTCCAAAGATGGTCAGAAATTCTTCACTGCCTTAG
GCAATCTAAAGGATATTCTGGCATGGTCATACTGTTGACTAGTTATAATA
AAGATCTGACAGCCATTAGCAGAGGCAGAAAGTATGAGGGTAGAACTTCT
GGGCAGATGGAGGTGATGCATGGGGAAGCAAGCTGAACTAGGAGAATCAA
AGAGACTCACACCCCCAACTGAATGGACCAGAATAGAAGCAATGAGGAAA
AGAATAGCCATATGGCAGGGTAGGCCAGGAAGTCAGGTTAAGTTAGATAA
GCTAGTAGAGAGACTTACCCAGCTAAAGGCCACCAGCTTTAAGCTATATA
GGTTTTTGCGGCTAACTTATATATTACGTCTGTCTGAGACACCACTCTAG
TACTTCTCTTCCTAAGATTTTATTTACTTTTTGCATATTTCTCCATAGAA
ATTTTTGTATTCAAACTTCTTATTCTTTCCTCCTTTTCCCTATT
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAAACCACATGAACTTCAAGAAGAGGGA
AGACCAAATTGTGGATACTTCGATACTTCTGAGAAGGGGGAACAAAATAC
CCATGGAAGGAGTTACAGAGACAAAGTATGGAGCAGAGACTGAAGGAATG
ACCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATACAACCACCA
AACCCAGACACTATTGTGGATGCCAACAAGCGCTTCCTGATAGGAGCCTG
ATATAGCTGTCTCCTGAGTGGCGCTGCCAGTGCCTGACTAATACAGAGGT
GGATGCTCACAGTCATCTATTAGACCAAGAACAGGGTCCCCAATGAAGGA
GCTAGAGTAAGGACCCAAGGAGCTGAAGGGGTTTGAAGCTCCATAAGAGG
AAAAACAGTATGAACTAACCAGTATCCCCAAAGCTCCCAGGGACTAAATC
ACTAACCAAGGAGTATACATGTTGGGACTCATGACACCAGCTGCATATGT
AGCAGAGGATGACCTAGTTAGTCATCGCTGCCAAGAGAGGCCCTTAGTCC
TGTGAAGGCTTCATGACCCAGTGCGCCGTATTTCTCGCACCGCTATCCCG
CATTGTCCGTACTTCCGTTTTCCCTCTTCCCCCCCCCCCCCTTCTTCCTT
TCTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_l10.b1 MSMg01no143_l10.b1 CHROMAT_FILE:
MSMg01no143_l10.b1 PHD_FILE: MSMg01no143_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:20 2005
         (369 letters)



>mm_chr6_105133379_105134147
          Length = 769

 Score =  629 bits (325), Expect = 0.0
 Identities = 354/367 (96%), Gaps = 7/367 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctatgcc----gtgacctttcttacattgtattaaggtgcatctctctattt 60
           |||||||||||   |    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctcta---caggggtgacctttcttacattgtattaaggtgcatctctctattt 260

                                                                       
Query: 61  tcaattgcaaattctatgctaacagagggctaactggtggaagaattttggtgttgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaattgcaaattctatgctaacagagggctaactggtggaagaattttggtgttgccat 320

                                                                       
Query: 121 ttctatggcccaaaacaggctttatatttgtgaatatttgtcctttcgtgcctgtccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 321 ttctatggcccaaaacaggctttatatttgtgaatatttgtcctttcatgcccgtccaaa 380

                                                                       
Query: 181 gatggtcagaaattcttcactgccttaggcaatctaaaggatattctggcatggtcatac 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gatggtcagaaattcttcactgccttagtcaatctaaaggatattctggcatggtcatac 440

                                                                       
Query: 241 tgttgactagttataataaagatctgacagccattagcagaggcagaaagtatgagggta 300
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 441 tgttgactagttataataaagatctgacagccaaaagcagaggcagaaagtatgagggta 500

                                                                       
Query: 301 gaacttctgggcagatggaggtgatgcatggggaagcaagctgaactaggagaatcaaag 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 gaacttctgggcagatggaggtgatgcaaggggaagcaagctgaactaggagaatcaaag 560

                  
Query: 361 agactca 367
           |||||||
Sbjct: 561 agactca 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)