Query= MSMg01no143_o24.b1 MSMg01no143_o24.b1 CHROMAT_FILE:
MSMg01no143_o24.b1 PHD_FILE: MSMg01no143_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:37 2005
(593 letters)
>mm_chr6_88785713_88786707
Length = 995
Score = 1062 bits (549), Expect = 0.0
Identities = 580/591 (98%), Gaps = 4/591 (0%)
Strand = Plus / Plus
Query: 6 gaattc-agctttattgcccacac--cccctacgtcctgtccagccctgtatgcggaaat 62
|||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaagctttattg-ccacacaccccctacgtcctgtccagccctgtatgcggaaat 264
Query: 63 agccgaagcaagccagggctgggtgagaaccaggagggagcaggtaggacgctgggggag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agccgaagcaagccagggctgggtgagaaccaggagggagcaggtaggacgctgggggag 324
Query: 123 atgggactaagttcaaagcctaccataccccagttttccctgagtggtgcctgccccaaa 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 atgggactaagttcaaagcctaccgtaccccagttttccctgagtggtgcctgccccaaa 384
Query: 183 tcttggggcttccttgtgcactggaggagtaggctcatcccaaggacatcctgtgaggtc 242
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 tcttggggcttccttgtgcactggaggaggaggctcatcccaaggacatcctgtgaggtc 444
Query: 243 ccctctgcccattgtaatgccatcttgctgcgtgcacacactgcgcatgcctgtcaccgt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccctctgcccattgtaatgccatcttgctgcgtgcacacactgcgcatgcctgtcaccgt 504
Query: 303 ggctgccctggccacggaagggctcagcagtccaagccaatggacacgagcaggtcctcg 362
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctgccctggccacggaagggcttagcagtccaagccaatggacacgagcaggtcctcg 564
Query: 363 agtgcccgcagccgccgctgtgcctcttcaatggcactgtatgtctggacggtgctggcc 422
||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 agtgcccgcagtcgctgctgtgcctcttcaatggcactgtatgtctggaccgtgctggcc 624
Query: 423 acatggaagcggatgtcatcgacgagcgggatggagtctgtctcctgccgggccgctaca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acatggaagcggatgtcatcgacgagcgggatggagtctgtctcctgccgggccgctaca 684
Query: 483 gctgccgcctcttcccgcacggcctccacgaaatcctcccgctctaccagctgcagagaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctgccgcctcttcccgcacggcctccacgaaatcctcccgctctaccagctgcagagaa 744
Query: 543 gcaggttcagcacaggctgcatcccaccctctcaggctccccctctctgca 593
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcaggctcagcacaggctgcatcccaccctctcaggctccccctctctgca 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 995
Length adjustment: 10
Effective length of query: 583
Effective length of database: 985
Effective search space: 574255
Effective search space used: 574255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_o24.g1 MSMg01no143_o24.g1 CHROMAT_FILE:
MSMg01no143_o24.g1 PHD_FILE: MSMg01no143_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:37 2005
(343 letters)
>mm_chr6_88932988_88933730
Length = 743
Score = 598 bits (309), Expect = e-175
Identities = 333/341 (97%)
Strand = Plus / Minus
Query: 1 cagagctaaaaacaccacagggacaggccagaatactggtcagtggagggacaaactgtc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 541 cagagctaaaaacaccacagggagaggccagaatactggtcagtggagggacaaactgtc 482
Query: 61 aacgaagcctgaatcttcgccatcttcacaaacttgaggtaccggctctctccgtggtgg 120
|||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||
Sbjct: 481 aacgaagcctgaatctgagccaccttcacaaacttgaggtgccggctctccccgtggtgg 422
Query: 121 acacatgtgcccaggcttcatggtgcttgcagatggccacccaggattctgacaggaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 421 acacatgtgcccaggcttcatggtgcttgcagatggccacccaggattctgacgggaggg 362
Query: 181 tggtagagggtttcctctgcagtctgcatcctccctggggatcgccctggaaggcccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggtagagggtttcctctgcagtctgcatcctccctggggatcgccctggaaggcccatg 302
Query: 241 ccatgcctaggtgccctgtcacaggcagctttggcagctgcttgcagaaacactaattgg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccatgccaaggtgccctgtcacaggcagctttggcagctgcttgcagaaacactaattgg 242
Query: 301 gaagtgaagcagcgaagtggctttaatgagctaccttgttg 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaagtgaagcagcgaagtggctttaatgagctaccttgttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
