BAC Information

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BAC

Clone NameMSMg01-143P11
Chromosome6 (Build37)
Map Location 70,240,333 - 70,241,019
singlet/doubletsinglet
Overlap geneIgk
Upstream geneGm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829
Downstream geneIgkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143P11.T7 (MSMg01no143_p11.b1)MSMg01-143P11.TJ (MSMg01no143_p11.g1)
ACCAG348168AG348169
length769720
length of high quality
(start - end)		59 (300 - 358)633 (74 - 706)
definitionCHROMAT_FILE: MSMg01no143_p11.b1 PHD_FILE: MSMg01no143_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:39 2005CHROMAT_FILE: MSMg01no143_p11.g1 PHD_FILE: MSMg01no143_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNNNNNNNNNNNNCCCCNNNCCCCCCCCCCCCCCCCCCCAAGCNNNNN
NCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXTTCGAACCGANCCGNGG
AANNCNGACTTACAAAAGNAGACAGCNCNAGNGNNNCCNCNNNCAAGNCA
AACCAGCNNCCNCCAACACCAGNGNACNNNNNCNNNCAAANNCNCGACGG
NCCNNCAAGGNAGCAGNNAACGGCAAAGCCANNCAGAACNCCNAAGGCCG
GCAGGGNNGNGAGGNCACCACAANGCNNNNACCNNAANNNNNTTTTTTTT
TGAGCTTTCTGTAGAGATCAATTTTAAAAGACTGTAATGTCAGTCATCAG
GAAANAANTTTTTTTTATTTTNGGANCAAGGGCNAANNCCAGNGNCNNNC
CNNCNAAGACCCCCCCCCCACCAGCNGAAAAAAGNANNNGGAAAAANAAN
NNNCCNNNCNNACGANCCCAGAGAGAGANCAACGGCGCAGGAAGAAAGCA
CGAGACCAGGCAAGGAAGACCNAGACANACGGAAGACAGCGAGGAGGGGA
CAAAGACAAGCGCCGACCCCCACGACAGCCCCCAACCACAAGAGCGCGAA
AACAANGAACCCGCGAGAGCAAAGAGCAGACCACGAGGGCCGCACGACAG
AGGCCCCGCAGGAAAGGAAGCCCGCGAAAAAGGGGCAGGGCAGACACATT
TTTTTTTTACAGAGGAAAAAAGAAACCCAAACACCCAGGCATGAAATAAG
CTTTAATGTCATTCACACT

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCTGTTCAACCACTGACCATTTCTG
CTAGAAGACCAGGTAGGCAGCCTGCAGACTTTCTCCGCTCTCTATTCCCC
CAGGCCCACGTCTCAGAACCACCCCAAGCTCTGCAATAGAACATAAGCTG
TAGCCCTCCCTCCCTCCCTCCCTACCTCCAGCCCATGCCTCCTATACATT
TCACAAACCATCACCTTCTGCCTCCACTCCCACCCTTGTGGCTCTGTAAT
AGTCCCCAACATAGACAGAAAATCCCTACTCAACAACAGGCCATAGTGGC
CAAATAAACAACTGCCTGTGGGCATACTCCACTCTCTCTGTTACCCCAGA
CCCAATTCTCGCGATTGTCTCTAGCACTACAACAGACTACACCCCCTCCT
CCCCTGACCTCCTACTCCTATTTCCAACATCAGCAAACATTCCTCTGAAC
ACACCAACAAAGTGTTCAGTGAAACAGGCAATAAGCTCTCTGAAAATCCA
GAGAGGAAACAGAAACCAAGGAGAATTAAAAAAAAAATACTGAGCAAAGA
CAAACCAAGAAATCAGTAACTAGATCTATAGTCCCCAAACCCAGATGCCT
AGATACTAGCTTTAGAACATAATCAACAATATACAGGGCAATATGTCTTC
ACCAGAACCCAGATGTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_p11.g1 MSMg01no143_p11.g1 CHROMAT_FILE:
MSMg01no143_p11.g1 PHD_FILE: MSMg01no143_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:40 2005
         (633 letters)



>mm_chr6_70240185_70241216
          Length = 1032

 Score =  988 bits (511), Expect = 0.0
 Identities = 618/689 (89%), Gaps = 58/689 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgttcaaccactgaccatttctgctagaagaccaggtaggcagcctgcagactttc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tccctgttcaaccacagaccatttctgctagaagaccaggtaggcagcctgcagactttc 208

                                                                       
Query: 61  tccgctctctattcccccaggcccacgtctcagaaccaccccaagctctgcaatagaaca 120
           ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 209 tccactctctattcccccaggcccacatctcagaatcaccccaagctctgcaatagaaca 268

                                                                       
Query: 121 taagctgtagccctccc------------------------------------------- 137
           ||||||| |||||||||                                           
Sbjct: 269 taagctgcagccctccctccctccctccctccctccctccctccctccctccctccttcc 328

                                                                       
Query: 138 ---------tccctccctccctacctccagcccatgcctcctatacatttcacaaaccat 188
                    ||||||||||||||||||||||||||||||||| |  ||||||||||||||
Sbjct: 329 ctccctccttccctccctccctacctccagcccatgcctcctgtgtatttcacaaaccat 388

                                                                       
Query: 189 caccttctgcctccactcccacccttgtggctctgtaatagtccccaacatagacagaaa 248
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 389 caccttctgcctccactcccacccttgtggctctgtaataggccccaacatagacagaaa 448

                                                                       
Query: 249 atccctactcaacaacaggccatagtggccaaataaacaactgcctgtgggcatactcca 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atccctactcaacaacaggccatagtggccaaataaacaactgcctgtgggcatactcca 508

                                                                       
Query: 309 ctctctctgttaccccagacccaattctc-gcgattgtctctagcactacaacagactac 367
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 509 ctctctctgttaccccagacccaattctcag-gattgtctctagcactacaacagactac 567

                                                                       
Query: 368 accccctcctcccctgacctcctactcctatttccaacatcagcaaacattcctctgaac 427
           |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 accccc-cctcccccaacctcctactcctatttccaacatcagcaaacattcctctgaac 626

                                                                       
Query: 428 acaccaacaaagtgttcagtgaaacaggcaataagctctctgaaaatccagagaggaaac 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acaccaacaaagtgttcagtgaaacaggcaataagctctctgaaaatccagagaggaaac 686

                                                                       
Query: 488 agaaaccaaggagaattaaaaaaa---aaatactgagcaaagacaaaccaagaaatcagt 544
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 687 agaaaccaaggagaattaaaaaaagaaaaatactgagcaaagacaaaccaagaaatcagt 746

                                                                       
Query: 545 aactagatctatagtccccaaacccagatgcctagatactagctttagaacataatcaac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 747 aactagatctatagtccccaaacccagatgcctagatactagctttagaacataatcaat 806

                                        
Query: 605 aatatacagggcaatatgtcttcaccaga 633
           ||||||||||||||||||||||| |||||
Sbjct: 807 aatatacagggcaatatgtcttctccaga 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1032
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1022
Effective search space:   636706
Effective search space used:   636706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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