Query= MSMg01no144_k06.b1 MSMg01no144_k06.b1 CHROMAT_FILE:
MSMg01no144_k06.b1 PHD_FILE: MSMg01no144_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:31 2005
(258 letters)
>mm_chr6_103714128_103714785
Length = 658
Score = 460 bits (238), Expect = e-134
Identities = 250/254 (98%)
Strand = Plus / Minus
Query: 5 gaattcatgttctcatcctcatgcagtaacttacttcaagccatattcccatgggtagaa 64
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gaattcatgttttcatcttcatgcagtaacttacttcaagccatattcccatgggtagaa 399
Query: 65 atatcatccttttatagagaaacagaaattctgaagagctcttatacatagcacctttgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atatcatccttttatagagaaacagaaattctgaagagctcttatacatagcacctttgt 339
Query: 125 aaaccctactattcaaatgatctaccattctaaacatctattcagaagataaatagtgga 184
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 338 aaaccctactcttcaaatgatctaccattcaaaacatctattcagaagataaatagtgga 279
Query: 185 agctctttcttagacaatgtgttgatgaaagtaaaaattgctaaaatactttttggaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agctctttcttagacaatgtgttgatgaaagtaaaaattgctaaaatactttttggaaag 219
Query: 245 gaatttgcccaaca 258
||||||||||||||
Sbjct: 218 gaatttgcccaaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space: 161601
Effective search space used: 161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no144_k06.g1 MSMg01no144_k06.g1 CHROMAT_FILE:
MSMg01no144_k06.g1 PHD_FILE: MSMg01no144_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:31 2005
(340 letters)
>mm_chr6_103579988_103580728
Length = 741
Score = 600 bits (310), Expect = e-176
Identities = 331/338 (97%), Gaps = 1/338 (0%)
Strand = Plus / Plus
Query: 4 agatgcaaatagatctatgaaatattgtttaaactaaatctcttcatcagtttgtagcat 63
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 204 agatgcaaatagatctatgaaatattgtttaaactgaatctcttcatcagtttgtagtat 263
Query: 64 tagtaaatgactcagaaccttggacaaaataggctggagtttatcaaagagctacatttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagtaaatgactcagaaccttggacaaaataggctggagtttatcaaagagctacatttt 323
Query: 124 catctaaattttagatttatgagaacagtgtgcttattacaaatatttcattaatgcaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 catctaaattttagatttatgagaacagtgtgcttattacaaatatttcattaatccaga 383
Query: 184 gatatggaaaaacatggaactgctcataacttcacttaatcactttaccattattatagg 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 gatatggaaaaacatggaactgctcataacttcacttaatcactttactattattatagg 443
Query: 244 tgatatttaattacaacaatcattgcatgtaatttattatcaatttttt-caagtttcaa 302
||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 444 tgatatttaattacaacaatcattgtatgtaatttattatcattttttttcaagtttcaa 503
Query: 303 atttctcacttgtggttagttttatgattatgtttcag 340
||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttctcacttgtggttagttttatgattatgtttcag 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space: 242292
Effective search space used: 242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
