NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGC
GGAATTCCAGGGGAAAATTCCCAATATTTTTCATTGTTAGAATATAAATG
ATGATTATTCTCATAGAAGAATTGTTATGTATTTAACAGTAACAAGAGGG
ATTATTAAATGAACCAGATTGTGAAAACATCTCAAAAGCCCCCTTAGGGA
GTCTAATTTTCTTTTGCTTAATTTTAAATCATAATACTTTACTAAATTAT
GAGGTATAAGACTGTGAACCTTAGCAAATCAGCCTATTTGTGTCTATTAT
ATACACTGGCAGCAGAGGAGGAAAAATAGCAGTCATTATTGTGGCTAAAA
TTATAATATGGAAAAGACATGCATGATAAAATGCTTTTGCAAGCATCTGA
GGAGTGGAGAATGAAGGTAAGAATACCATACTAAATTGTATGAAGAAAGA
ATCTCTTATGTGAGGGTTTTAGTGCTATGATTTCTAATTTGCAACACAAT
GACTCACCTGTATTTAAAATTGTCTATATGAAAGTGAATGTAATTAATAT
ACAGCATGACAATTTAAGACAAACAATAGCAAAAGCCAAGGCACTAAATG
CAGGAACACACTATATTACATTCTTCACAGCAATTCTGAGAGGCCCATGG
GAACTATTAGACACCTAAAAGTGGACAAGTGAGTTGAGTTCATGAAGGCA
GCAGCTGCAATTATTGAAAGGAAATTGTCAGTAAAN

NCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTATATATGTACTTGATTTTAA
ACTGGGTTATTTGATTTATTGATGTCTAGTTTCTTGTATTATTTATATAT
TTTGAATACCAGCCTTCTGTCAGATATGGGTTGGTGAAGAGTTTTTCCCT
TTGTAGAGACAACCAGTTTGTCCTTTTGTAAGTTTCCCTTGCCTGCAGAA
AATTTTTAGTTTCATGAGGTCCTATTTATTAATTGTTTACCATAGTGTCT
GAGCTATTTGTTTTTTTTTTTTTTCAGTAAGTCATCTCCTCTGCCAACGT
ATTCATGGCTATTTCTCACTTTCTCTTTTATCAGGTTTAGTAGATCTGGT
TTTACCCTGAGGACTTGACCCACTTGGACTTGAGGTTTGTGTAGGGTGAT
AGCTATGGATGTGCGTGCATTCTTCTAAAGGCAGGATTATCAGCAGCACT
TGTTGAATATGCTTTTATTTTTTCACTGTATAGTTCTGGCTCGTTTGTCA
AAAATTTAGTGTTCATACATTTGTAGGTTTACCTCTGGGTGTTTGATTAT
ATTCCAGCTATATCACCTTGTCTTTGTTCATGCCATCCCTATGCGAACTG
TCATTTCACTTACTATTGTTCTGTATTCCCACTTGTATTCCCGCACGGTG
ATCCCTCCTAATCCGTACTATTACTAACG

Query= MSMg01no144_l21.b1 MSMg01no144_l21.b1 CHROMAT_FILE:
MSMg01no144_l21.b1 PHD_FILE: MSMg01no144_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:39 2005
         (686 letters)



>mm_chr6_20443859_20444945
          Length = 1087

 Score = 1232 bits (637), Expect = 0.0
 Identities = 673/685 (98%), Gaps = 1/685 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccaggggaaaattcccaatatttttcattgttagaatataaatgatgattattc 62
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ggaattccaggggaaaatttttaatatttttcattgttagaatataaatgatgattattc 828

                                                                       
Query: 63  tcatagaagaattgttatgtatttaacagtaacaagagggattattaaatgaaccagatt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tcatagaagaattgttatgtatttaacagtaacaagagggattattaaatgaaccagatt 768

                                                                       
Query: 123 gtgaaaacatctcaaaagcccccttagggagtctaattttcttttgcttaattttaaatc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gtgaaaacatctcaaaagcccccttagggagtctaattttcttttgcttaattttaaatc 708

                                                                       
Query: 183 ataatactttactaaattatgaggtataagactgtgaaccttagcaaatcagcctatttg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ataatactttactaaattatgaggtataagactgtgaaccttagcaaatcagcctatttg 648

                                                                       
Query: 243 tgtctattatatacactggcagcagaggaggaaaaatagcagtcattattgtggctaaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tgtctattatatacactggcagcagaggaggaaaaatagcagtcattattgtggctaaaa 588

                                                                       
Query: 303 ttataatatggaaaagacatgcatgataaaatgcttttgcaagcatctgaggagtggaga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttataatatggaaaagacatgcatgataaaatgcttttgcaagcatctgaggagtggaga 528

                                                                       
Query: 363 atgaaggtaagaataccatactaaattgtatgaagaaagaatctcttatgtgagggtttt 422
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 atgaaggtaagaatagtatactaaattgtatgaagaaagaatctcttatgtgagggtttt 468

                                                                       
Query: 423 agtgctatgatttctaatttgcaacacaatgactcacctgtatttaaaattgtctatatg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agtgctatgatttctaatttgcaacacaatgactcacctgtatttaaaattgtctatatg 408

                                                                       
Query: 483 aaagtgaatgtaattaatatacagcatgacaatttaagacaaacaatagcaaaagccaag 542
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 407 aaagtgaatgtaattaatatacagcatgacaatttcagacaaacaatagcaaaagccaag 348

                                                                       
Query: 543 gcactaaatgcaggaacacactatattacattcttcacagcaattctgagaggcccatgg 602
           |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcactaaaggcagggacacactaaattacattcttcacagcaattctgagaggcccatgg 288

                                                                       
Query: 603 gaactattagacacctaaaagtggacaagtgagttgagttcatgaaggcagcagctgcaa 662
           ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 287 gaactattagacacctaaaagtggaaaagtgaggtgagttcatgaaggcagcagctgcaa 228

                                    
Query: 663 ttattgaaagg-aaattgtcagtaa 686
           ||||||||||| |||||||||||||
Sbjct: 227 ttattgaaaggaaaattgtcagtaa 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space:   728052
Effective search space used:   728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)