CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAAATCCGCGG
AATTCCTTATTTCTTACCAGAGACTAAAGTGGAATAAAACTAAAAATCAA
AAGCAAGAGAAATCAACAATTACATGACAAATGAACAATGCACTTTGGAA
TGAATATCGGCTCACTGAAGCAATCATAGAAAAAACTAAAGACTTCCTAG
AATCAAATGAAAATGAGAGCACAGCTGCTAAAAGCTCAGAGACACAGCTA
AGAGAGCTGAGAGAAATGCATGGAGCTAAAGTCCTGATGTTACAAACACA
ACACAAACNNNCNNCATTAGCTAGGTCTCAAGTAAATAGTCTCGATGATG
TACCTCAAGACCCCAGAAAACAAGGAGCANAACCCAAAATGTNACAACTG
GGAAGAACAAAGATTAGTGTACCACCCCTAAAAATAGAGACTACAAATNC
NNNACATACAATATTATNNNNAAAATTGGTTTTTTTTAAAAAAACAGAAA
ATNTTTTTCAANNNNNNTNCCATCAACAAAAGGNNTTCAANNTNNNNNNN
NNCCAAAAGTAAAAATACCTCTTTTTCTTCCCCCCTGGAACCCTCTATTA
CAAAAATTTTTTTTTTTTGTGTTCTGTTTTCGTTNTGTCCCNNTTTACNN
CCCTTCTCTAAAAAGCGGCCCCCTATTTTTTTTTATCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTATTCCAGAAATCAATGGAAGTTTAGGTTTTATTTTG
ACCTCCTATTCCCAATTAGTAGGAACATAAGGTTTTTTTTTTTTTTTATA
AATTTCATTGTTTATAGCAACAATAGTTAACACTTCAAACTTCTAGGATA
TACCTAAAATATGGTTATCTGGGATACTTATAAACAGGACAATATTGGTT
TGAAGAATGTCAAGTGACTTCCTCAAGGTTATTAGGCTGACGTAACCAAA
TCCAGAATTTATAATTTCAGCCTCTAACTTCTGTTATACTTTCATTTTTA
TTCTCAGTTCTCTCAATTGTTGGTGGGGCTTTTGGTCGTATAATTAAACT
TGAAGGAATCTGAATAACCCCCCAACCTAGAGAAATGAAACAAACTGTTG
AAGGTCAAAGGATAAAGAGCTGAAGAGATGACTCAGTGGGAAAAGCACCT
GCTCCTCTTACAGAGGACCAGATTCAGATCTCAGCACTCATGTCAGGAAG
CTCACAGCCACCTCTAACTCCAGCTCCAGGGGATCCGATGCCCTCTTCTG
GCCTCCACAGGCACTCTTCCCGACTCCCCCTACAGCTATATCTTTTTTTA
TAAAGTAAAAATGCAAAATGGGCAATTTGAACACATCTTTCAGAGTATAA
TTTTTCTTTATTAGGTCACTATTTAAGGAAACTCTCCAATTTAGAACCCT
TCTCTTC

Query= MSMg01no144_o22.g1 MSMg01no144_o22.g1 CHROMAT_FILE:
MSMg01no144_o22.g1 PHD_FILE: MSMg01no144_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:53 2005
         (598 letters)



>mm_chr6_115090957_115091952
          Length = 996

 Score =  994 bits (514), Expect = 0.0
 Identities = 578/604 (95%), Gaps = 12/604 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatggaagtttaggttttattttgacctcctattcccaattagtaggaacataaggtttt 60
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 199 aatggaagtttaggttttattttgacctcctattcctaattagtaggaacataaagttgt 258

                                                                       
Query: 61  tttttt-ttttta-taaatttcattgtttatagcaacaatagttaacacttcaaacttct 118
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttttttctttttaataaatttcattgtttatagcaacaatagttaacacttcaaacttct 318

                                                                       
Query: 119 aggatatacctaaaatatggttatctgggatacttataaacaggacaatattggtttgaa 178
           ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggatatacctgaaat--ggttatctgggatacttataaacaggacaatattggtttgaa 376

                                                                       
Query: 179 gaatgtcaagtgacttcctcaaggttattaggctgacgtaaccaaatccagaatttataa 238
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaatgtcaggtgacttcctcaaagttattaggctgacgtaaccaaatccagaatttataa 436

                                                                       
Query: 239 tttcagcctctaacttctgttatactttcatttttattctcagttctctcaattgttggt 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 tttcagcctctaacttctgttatactttcatttttattctcagttctctcaactgttggt 496

                                                                       
Query: 299 ggggcttttggtcgtataattaaacttgaaggaatctgaataacccccc----aacctag 354
           ||||||||||||||||||||||||||||||||||||||| ||| |        | |||||
Sbjct: 497 ggggcttttggtcgtataattaaacttgaaggaatctgagtaatc----gtttagcctag 552

                                                                       
Query: 355 agaaatgaaacaaactgttgaaggtcaaaggataaagagctgaagagatgactcagtggg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 553 agaaatgaaacaaactgttgaaggtcaaaggataaagagctgaagagatgactcagtggt 612

                                                                       
Query: 415 aaaagcacctgctcctcttacagaggaccagattcagatctcagcactcatgtcaggaag 474
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 613 aaaagcacctgctcctcttacagaggaccagatgcagatctcagcactcatgtcaggaag 672

                                                                       
Query: 475 ctcacagccacctctaactccagctccaggggatccgatgccctcttctggcctccacag 534
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 673 ctcacagccacctctaactccagcttcaggggatccgatgccctcttctggcctccacag 732

                                                                       
Query: 535 gcactcttcccgactccccctacagctatatctttttttataaagtaaaaatgcaaaatg 594
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 733 gcactcttcccgactccccctacagctatatctttttttaaaaagtaaaaatgcaaaatg 792

               
Query: 595 ggca 598
           ||||
Sbjct: 793 ggca 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 996
Length adjustment: 10
Effective length of query: 588
Effective length of database: 986
Effective search space:   579768
Effective search space used:   579768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)