BAC Information

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BAC

Clone NameMSMg01-145A24
Chromosome6 (Build37)
Map Location 18,064,984 - 18,065,620
singlet/doubletsinglet
Overlap genenone
Upstream geneEG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2, Asz1
Downstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145A24.T7 (MSMg01no145_a24.b1)MSMg01-145A24.TJ (MSMg01no145_a24.g1)
ACCAG348965AG348966
length690689
length of high quality
(start - end)		645 (46 - 690)613 (77 - 689)
definitionCHROMAT_FILE: MSMg01no145_a24.b1 PHD_FILE: MSMg01no145_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:03 2005CHROMAT_FILE: MSMg01no145_a24.g1 PHD_FILE: MSMg01no145_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGATCCGC
GGAATTCACTGTGTTTCTCAGGCTGTCTTGGAACTCACCATCTCTGCTTC
TCTTTTGTGTGTGCAGGGATTACAGCAGGGATTCCACATGCCACCATGTC
CAGCTTCTATTTAGATCTTCCCTGATGCCAGATACCAGCTTCTCTATATC
TCATTTTTACTTTTAGACCAAACTCAAATTCTAGAAGTTTGCCTTTTCTG
TATTATAGAAACTCCATGCATAATTGGTAAATGATGGAGGAAATCTTTGT
CTTAATGGGACATTTGTCTCAAAAAGACATGAAATATTATCCATGAGGTT
TGTGTTAGTAATTCCATAGTTCTCATTTTGAGAAAAAAAATAAAGTATTG
AATACATTTTTTATGGAGCCAAAATAGAAACAGTGAAAAACTGTAATAGA
GTTTTTGAATGGCCTCAGGTTAAAAAATGTCTCAAGCTAATTAAATTAAA
TAAAAATTGGTCATGGATATATGTTAACATAATAGCAGCATTATTATTAC
TTAAAATGAAAAACAATGTACAGCAAATGATGAAGACACAAAGAAAATTA
TATATATTTTTATAAAAAATATGTACATATATGCCATTAATATTAGCTTT
TTAGGGATAGTAGACCAAATTACCACAAACTGGGTGGCTT

NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACCTACCAGAAGAAGCCTTGTGC
TCGCAATAGATTTGAAAATATTAAAATGACACATCACACTTTGTTTTTTT
TCAATTTTTTATTAGATATATTCTTCATTTACATTTCAAATGCTATCTTG
AAAGTCCCCTATACCCTCCCCCTGCCCTGCTCCTCTACCCACCCACTCTC
ACTTCATGGCCCTGGCGTTTCCCTTTACTTGGGACATATAAAGTTTGCAA
TACCAAGGGGCCTCTCTCCCCAATGATGGCCGACTAGGCCATCTTCTGAT
ACATACGCAGCTAGAGACACAAGCTCTGAGGGTACTGGTTAGTTCATATT
GTTGTTCCACCTATAGGGTTGCAGATCCCTTCAGCTCTTGGGTACTTTCT
CTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGCTGACTGTGAG
CATCCACTTCTGTGTTTGCCAGGCACTGGCATAGCCTCACAAGAGACAGC
TATATCAGGGTCCTTTCCACAAAAATCTTGCTGGCATATGCAATAGTGTC
TGGGTTTGGTGGCTGATTATGGGAAGGATTCCCGGATGGGGCAGTCTCTG
GATGGTCCATTCTTTTGTCTCAGTTCTAAACTTTGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_a24.b1 MSMg01no145_a24.b1 CHROMAT_FILE:
MSMg01no145_a24.b1 PHD_FILE: MSMg01no145_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:03 2005
         (645 letters)



>mm_chr6_18064779_18065823
          Length = 1045

 Score = 1170 bits (605), Expect = 0.0
 Identities = 631/641 (98%), Gaps = 5/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcactgtgtttctcaggctgtcttggaactcaccatctctgcttctcttttgtgt 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcactgtgtttttcaggctgtcttggaactcaccatctctgcttctcttttgtgt 265

                                                                       
Query: 66  gtgcagggattacagcagggattccacatgccaccatgtccagcttctatttagatcttc 125
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 266 gtgcagggattacagcagggattccacatgccaccatgttcagcttctatttagatcttc 325

                                                                       
Query: 126 cctgatgccagataccagcttctctatatctcatttttacttttagaccaaactcaaatt 185
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctgatgccagatatcagcttctctatatctcatttttacttttagaccaaactcaaatt 385

                                                                       
Query: 186 ctagaagtttgccttttctgtattatagaaactccatgcataattggtaaatgatggagg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctagaagtttgccttttctgtattatagaaactccatgcataattggtaaatgatggagg 445

                                                                       
Query: 246 aaatctttgtcttaatgggacatttgtctcaaaaagacatgaaatattatccatgaggtt 305
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 446 aaatctttgtcttaatgggacatttgtctcataaagacatgaaatattatccatgaggtt 505

                                                                       
Query: 306 tgtgttagtaattccatagttctcattttgagaaaaaaaataaagtattgaatacatttt 365
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 506 tgtgttagtaattccatagttctcattttgagaaaaaaa-taaagtattgaatacatttt 564

                                                                       
Query: 366 tt-atggagccaaaatagaaacagtgaaaaactgtaatagagtttttgaatggcctcagg 424
           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 tttatggagccaaaatagaaacagtgaaaaactgtaatggagtttttgaatggcctcagg 624

                                                                       
Query: 425 ttaaaaaatgtctcaagctaattaaattaaataaaaattggtcatggatatatgttaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaaaaaatgtctcaagctaattaaattaaataaaaattggtcatggatatatgttaaca 684

                                                                       
Query: 485 taatagcagcattattattacttaaaatgaaaaacaatgtacagcaaatgatgaagacac 544
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taatagcagcattatta---cttaaaatgaaaaacaatgtacagcaaatgatgaagacac 741

                                                                       
Query: 545 aaagaaaattatatatatttttataaaaaatatgtacatatatgccattaatattagctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaagaaaattatatatatttttataaaaaatatgtacatatatgccattaatattagctt 801

                                                    
Query: 605 tttagggatagtagaccaaattaccacaaactgggtggctt 645
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tttagggatagtagaccaaattaccacaaactgggtggctt 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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