Query= MSMg01no145_i04.b1 MSMg01no145_i04.b1 CHROMAT_FILE:
MSMg01no145_i04.b1 PHD_FILE: MSMg01no145_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:37 2005
(557 letters)
>mm_chr6_61181608_61182567
Length = 960
Score = 903 bits (467), Expect = 0.0
Identities = 534/561 (95%), Gaps = 9/561 (1%)
Strand = Plus / Plus
Query: 6 ggaattccaacctgtcacactcggtttaggtggtattcgtagtatatgaatgaatgcaga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattccaacctgtcacactcggtttaggtggtattcgtagtatatgaatgaatgcaga 265
Query: 66 taggctcatttatcttgttgcgtagatatatgtgcatgtataaactcatatcaatgtatt 125
||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||
Sbjct: 266 taggctcatttatcttgttgcatagatatatgtgcatgtataaacttatatcactgtatt 325
Query: 126 ggtatttatgcatatataaaataaatgtatacatactatgacaaactttatgtttaatat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggtatttatgcatatataaaataaatgtatacatactatgacaaactttatgtttaatat 385
Query: 186 ttttatattttgttttaatcttatgaaaattcaatctgtttctc---cctgccccctcca 242
||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||
Sbjct: 386 ttttatattttgttttaatcttacgacaattcaatctgtttctctcccctcccccctcca 445
Query: 243 tgtagctgtttaattaaaaatatgcatggttactttttcagttgggtgatcatcatatat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtagctgtttaattaaaaatatgcatggttactttttcagttgggtgatcatcatatat 505
Query: 303 agtttttattatttagtttcttaattactgattttttccttatttttgtttgtttgtttg 362
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtttgtgttatttagtttcttaattactgattttttccttatttttgtttgtttgtttg 565
Query: 363 tttgttttt------aagaccggatttctctgtgttcctggctctcctggaactcactat 416
||||||||| |||||||| |||||||||| |||| ||| |||||||| |||||||
Sbjct: 566 tttgtttttgcttttaagaccgggtttctctgtgctccttgctatcctggaattcactat 625
Query: 417 aaagaccatgctagtctcaatcagactcatagagatccacctgcctctgcttcctgagtg 476
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 626 aaagaccatgctagtctcaatcagactcatagagatccacctgcctctgcctcctgagtg 685
Query: 477 ttgggattaaaggcatgagctaccaccacccagtttgatgttttcttaacagagagcatt 536
||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 686 ctgggattaaaggcgtgcgctaccaccacccagtttgatgttttcttaacagggagcatt 745
Query: 537 gtatttcttttattttcaata 557
|||||||||||||||||||||
Sbjct: 746 gtatttcttttattttcaata 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 960
Length adjustment: 10
Effective length of query: 547
Effective length of database: 950
Effective search space: 519650
Effective search space used: 519650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_i04.g1 MSMg01no145_i04.g1 CHROMAT_FILE:
MSMg01no145_i04.g1 PHD_FILE: MSMg01no145_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:37 2005
(498 letters)
>mm_chr6_61355494_61356391
Length = 898
Score = 955 bits (494), Expect = 0.0
Identities = 497/498 (99%)
Strand = Plus / Minus
Query: 1 ttaattctgaggaatagcgaatggctgagaagtaccagaaatgttcaacatcagggaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttaattctgaggaatagcgaatggctgagaagtaccagaaatgttcaacatcagggaaat 745
Query: 61 gcaaatcaaaacaaccctgaaattccacctcacatcagtcacaatggctaagatcaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcaaatcaaaacaaccctgaaattccacctcacatcagtcacaatggctaagatcaaaaa 685
Query: 121 ctcaggtgacagcagaagttggcaaggatcttgagaaagaagaatattcctccatgttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctcaggtgacagcagaagttggcaaggatcttgagaaagaagaatattcctccatgttgg 625
Query: 181 tgggtttgcaattgttggtgggtagagtttttagggttatatatgcataccatcatactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgggtttgcaattgttggtgggtagagtttttagggttatatatgcataccatcatactg 565
Query: 241 taagacaattggtactgctctaccagattgacataagaactggcaaagtggagcagtact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taagacaattggtactgctctaccagattgacataagaactggcaaagtggagcagtact 505
Query: 301 caaacactggggatcttagaaatctgagattctaagagtagaactgcccactctcagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaacactggggatcttagaaatctgagattctaagagtagaactgcccactctcagcct 445
Query: 361 ccaatgcctactctgagactaccactgagaggaccatagtctcttaacatagcacctgga 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 ccaatgcctactctgagactaccactgagaggaccatagtctcttaatatagcacctgga 385
Query: 421 cttcttctctatgataatgaagtatctagctagccttagccttcaaccaatgagctttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttcttctctatgataatgaagtatctagctagccttagccttcaaccaatgagctttcc 325
Query: 481 ttcctggatattctcatg 498
||||||||||||||||||
Sbjct: 324 ttcctggatattctcatg 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
