BAC Information

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BAC

Clone NameMSMg01-147H19
Chromosome6 (Build37)
Map Location 56,315,520 - 56,316,133
singlet/doubletsinglet
Overlap genenone
Upstream geneGhrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147H19.T7 (MSMg01no147_h19.b1)MSMg01-147H19.TJ (MSMg01no147_h19.g1)
ACCAG350746AG350747
length724737
length of high quality
(start - end)
617 (66 - 682)653 (76 - 728)
definitionCHROMAT_FILE: MSMg01no147_h19.b1 PHD_FILE: MSMg01no147_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:05 2005CHROMAT_FILE: MSMg01no147_h19.g1 PHD_FILE: MSMg01no147_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTAAACGACTCCTATTCCAAGAGAGCCGCGGAATCTGAGT
ACTTCCTAGAGGGTGATAAATGCTAGAGCCCTAAGGGACAGTGTGGGTTC
TTGGTTGTTGGTTGGTTGCTGTTGGTCTGAGTTTGTTAAGTAGTCATGTG
CAAAGAAGGAACAGCAAAAGAAGAAACTAGATATCCTGAAGGCAAAGATC
AAACTTTCCCCAACGGACTCAACGGCCCTAATCAGGAGGAACAAGTCTAA
TGATAATGTTGTCCCTTTCCCCTCTATCCCTTTTTCTGTCCTATCTAGTT
TTAGGGGGTTGAAAGAATAGAAAAAAGGGGGGTGGAAAGAGTGGAAGAAA
GAAGAACCCACAAAATAGCAAAAAAAAACCAGTTACAACTCCATAAGAGC
TAAGCCCACGACTGACCTAGGGGGTCCATCCACAGAGGCATAAATGACGA
AAATATGAGGTATGTATACACATAATAGAATGTTATCTGCAGGAAAATGG
ATATAGTAATTGGAGATTGTCATAATAAATGTATTAAGTAAAACTCACAA
AAACAAATGCCATCTTGTATCTCATCCGTGGATGACAGATTTCACACAGA
AACAAAATTCTGTATGTTTATATAAAATGAAAGCAAAAGCAAAACTGCCT
AGGGGGGATGAAGGGCATGAGTGAAAGGAGGTGGGGAAGAGGAACATAAT
CAACAGAAAGTTCACGTCCTTAGC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACAAGGCTGAAAACACTCCGTGG
CATATACCCAAAGGACTTGACATCCTACTCCTTAGACCCTTGCTCAGCCA
TGTTCACTTCTGCTGTACTCACAGCTGCCAGGACACTGAAATAGCCTTAA
TGACCTTCAACAGATGAATGGATAATAAAATTGTGATACACATACATAAT
GGAATACTATTCATTTGTAACAAAAATGAAATCATGAAATTTGTAGGTAA
ATGCGTGGAGCTAAGAAATATATTGAGTGAGAAAACCCAAACCCAGAAAG
ACAAGTATTGTCTGTTCTCTTTCATTTGTGGTTCCCAGTTCCACAGTTTC
AGATGTGATTATGCAACCGCCGCAGCTGAAGAAACCAGGAGTATAAAGAG
GGAAGGGCTAGAGAGGGGAATCCAGGATACAAGTGGTATAAAGAAGAAAA
TGGGAAAAATAGGGAGGGGGCTTTAACTGGGGCTAGGGAAAGGGGTCAAT
ACAGAAGGAGAGGGAGAAAGGAGGTACAAAAAACTTACCAAGGTGGCTTG
ATAAAACATCAAGGAATCATATTATTACCTATTTGCCTAAAATTGTATAT
AACACATATCTTAAATGAAGTTATACAACTTGGGCTGACAATGCTCTTTA
CAAGAGTCAGAGTTTACCTAACAAAACCACCAGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_h19.b1 MSMg01no147_h19.b1 CHROMAT_FILE:
MSMg01no147_h19.b1 PHD_FILE: MSMg01no147_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:05 2005
         (617 letters)



>mm_chr6_56315317_56316333
          Length = 1017

 Score = 1139 bits (589), Expect = 0.0
 Identities = 609/617 (98%), Gaps = 3/617 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaatgctagagccctaagggacagtgtgggttcttggttgttggttggttgctgttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ataaatgctagagccctaagggacagtgtgggttcttggttgttggttggttgctgttgg 263

                                                                       
Query: 61  tctgagtttgttaagtagtcatgtgcaaagaaggaacagcaaaagaagaaactagatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgagtttgttaagtagtcatgtgcaaagaaggaacagcaaaagaagaaactagatatc 323

                                                                       
Query: 121 ctgaaggcaaagatcaaactttccccaacggactcaacggccctaatcaggaggaacaag 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 ctgaaggcaaagatcaaactttccccaacggactcaacagccctaatcaggaggaacaag 383

                                                                       
Query: 181 tctaatgataatgttgtccctttcccctctatccctttttctgtcctatctagttttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctaatgataatgttgtccctttcccctctatccctttttctgtcctatctagttttagg 443

                                                                       
Query: 241 gggttgaaagaatagaaaaaaggggggtggaaagagtggaagaaagaagaacccacaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggttgaaagaatagaaaaaaggggggtggaaagagtggaagaaagaagaacccacaaaa 503

                                                                       
Query: 301 tagcaaaaaaaaaccagttacaactccataagagctaagcccacgactgacctagggggt 360
           |||||||||||   |||||||||||||||||||||||||   | ||||||||||||||||
Sbjct: 504 tagcaaaaaaa---cagttacaactccataagagctaagtataggactgacctagggggt 560

                                                                       
Query: 361 ccatccacagaggcataaatgacgaaaatatgaggtatgtatacacataatagaatgtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatccacagaggcataaatgacgaaaatatgaggtatgtatacacataatagaatgtta 620

                                                                       
Query: 421 tctgcaggaaaatggatatagtaattggagattgtcataataaatgtattaagtaaaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgcaggaaaatggatatagtaattggagattgtcataataaatgtattaagtaaaact 680

                                                                       
Query: 481 cacaaaaacaaatgccatcttgtatctcatccgtggatgacagatttcacacagaaacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacaaaaacaaatgccatcttgtatctcatccgtggatgacagatttcacacagaaacaa 740

                                                                       
Query: 541 aattctgtatgtttatataaaatgaaagcaaaagcaaaactgcctaggggggatgaaggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aattctgtatgtttatataaaatgaaagcaaaagcaaaactgcctaggggggatgaaggg 800

                            
Query: 601 catgagtgaaaggaggt 617
           |||||||||||||||||
Sbjct: 801 catgagtgaaaggaggt 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)