BAC Information

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BAC

Clone NameMSMg01-147H24
Chromosome6 (Build37)
Map Location 135,061,974 - 135,062,300
singlet/doubletsinglet
Overlap geneGprc5d
Upstream geneEtv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a
Downstream geneLOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1, Grin2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147H24.T7 (MSMg01no147_h24.b1)MSMg01-147H24.TJ (MSMg01no147_h24.g1)
ACCAG350756AG350757
length747769
length of high quality
(start - end)		669 (46 - 714)328 (76 - 403)
definitionCHROMAT_FILE: MSMg01no147_h24.b1 PHD_FILE: MSMg01no147_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:06 2005CHROMAT_FILE: MSMg01no147_h24.g1 PHD_FILE: MSMg01no147_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGATCAAAACGCGTGGAAAAATTTGAATGTCATGTCGAGCTGG
TATCGGCTTCTGGAATACCGAAAGGATCTCTCATCTTGGCTCCATCCTTT
GTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCACGAGC
CTCATTCTTGCAGCGTCTCACCAATCTCTCCAGCACCCAAAGAGGTTCCG
TCTGGTCCTGTGGAAACACAAACAGACCTTCTCGCCCAAGTCAACACCAG
ATCTGGTCGATCTTCTCCAAATATCCGGACAGAAGGTCCACCTACAGGTG
GCTGCTGAGGAGGCATAGGGAGGCGGCGCAAAAGCTAATTCGCCTTCCTC
CTCCACCTCAGCTCTTTTATTTCGTCCTTCCTGACCACCTGATAACACTG
TGTCTCCTTTCTTTTTCCTTTTTCTTTTTAAGCCCTTTTCCTCTTCCGAC
ATACTTTCTTGTTGCTCTGTAAGGATTTTCTGACCTGTCTTGACTGCCTC
TACACACAGTTTCAAACAGTAACAGAGTCCATATATCAGAACAAACAAGA
CCAAAACTATCAGACCTACCCACAAAGGGTCAATGGGAGAAAAAAGCATA
ACTACACAGCGAGGATCTATTGATCACTACACTGAGGTTATCATAGTTCC
TTAACTTGTCCCCAAACCAGGAACCTTAACTTATCCCACAACCAGGA

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGTTTAAGGAGAATCCCTACCTC
AATGGGTCAGGTGGGGCATAGTCAAGAAGGTACTCACTGCCAGCCTCTAA
CTCCTGTATGTGTGCACGCAAACACACCACACACACACGTAAAAATTACC
GTGGTGAGTGGTGTCTATGGAACAACACTCAAGATTGACCAGGGCTCCAC
ACACATACACCAGTGTATGAACACATGCGTGAACACACACATACATGGCT
ATATATTGGTGAAGAGCCGCTTGCTTTTATTTTTTGTTTGTTTTGATTTT
GGTTTTTTGTTGTTGTTCTTTTTTGTTTGTTTGTTTGGTTGGTTGGTTGG
TTGNNTCNNTNNNCTTTCCCCCCCCCCCTTTTTCCTTTCTCCTTTTTCTC
CCCCCTTCTCCTTCCCCCTCCCTCTTTTCCATCTTTCCTTCCTCCCCTCT
TTTTTTTTCCCCCTTTTCTTTCCCTCTCTTTTTTCCTCTTTCTTTTTTCC
TTTCTCACTTTTTCCTTCCTCTCCCTTCTTTTTCTTTTTCCTTTTTCTTC
ACACTCCTTCTTCTTTTTTTTTTCTCTTTCACCTTCTACCCCTTACACTA
TTTTTATTTATACTCCCCTCTTTCTCTTCCCACCCTTACTTTTCTTTTTC
ACTTCCCCTTTTCATTATTCCCTTTCCCTTCTCAACCCTCCATTTCTTTC
CTCTTCTCCCCTTTCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_h24.g1 MSMg01no147_h24.g1 CHROMAT_FILE:
MSMg01no147_h24.g1 PHD_FILE: MSMg01no147_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:06 2005
         (328 letters)



>mm_chr6_135061974_135062701
          Length = 728

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtttaaggagaatccctacctcaatgggtcaggtggggcatagtcaagaaggtactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgggtttaaggagaatccctacctcaatgggtcaggtggggcatagtcaagaaggtactc 268

                                                                       
Query: 61  actgccagcctctaactcctgtatgtgtgcacgcaaacacaccacacacacacgtaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actgccagcctctaactcctgtatgtgtgcacgcaaacacaccacacacacacgtaaaaa 208

                                                                       
Query: 121 ttaccgtggtgagtggtgtctatggaacaacactcaagattgaccagggctccacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttaccgtggtgagtggtgtctatggaacaacactcaagattgaccagggctccacacaca 148

                                                                       
Query: 181 tacaccagtgtatgaacacatgcgtgaacacacacatacatggctatatattggtgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tacaccagtgtatgaacacatgcgtgaacacacacatacatggctatatattggtgaaga 88

                                                                       
Query: 241 gccgcttgcttttattttttgtttgttttgattttggttttttgttgttgttcttttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gccgcttgcttttattttttgtttgttttgattttggttttttgttgttgttcttttttg 28

                                      
Query: 301 tttgtttgtttggttggttggttggtt 327
           |||||||| ||||||||||||||||||
Sbjct: 27  tttgtttggttggttggttggttggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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