Query= MSMg01no148_m03.b1 MSMg01no148_m03.b1 CHROMAT_FILE:
MSMg01no148_m03.b1 PHD_FILE: MSMg01no148_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:46 2005
(277 letters)
>mm_chr6_119568197_119568873
Length = 677
Score = 480 bits (248), Expect = e-140
Identities = 265/274 (96%), Gaps = 7/274 (2%)
Strand = Plus / Plus
Query: 7 gaattctttttattc----caaatataaatcagattgcatatttataattatcataaagt 62
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttttta---aaaacaaatataaatcagattgcatatttataattatcataaagt 262
Query: 63 atattttaaacataggctaatagcaacatagctgtttgtccacccctcaatcccatcaat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atattttaaacataggctaatagcaacatagctgtttgtccacccctcaatcccatcaat 322
Query: 123 tcgtggtgagttattaaacaggacactgtaaaatcatcagcgataggatgatttataaat 182
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 323 tcgtggtgagttattaaacaggacactgtaaaatcaccagcgataggatgatttataaat 382
Query: 183 aaaatcatcaatttttgttatatgccctggaagttctgtcaaaaatgtacagaaagaaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaatcatcaatttttgttatatgccctggaagttctgtcaaaaatgtacagaaagaaat 442
Query: 243 tataaatgtgactaataacacacaaaaagaaaaa 276
|||||||||||||||||| |||||||||||||||
Sbjct: 443 tataaatgtgactaataaaacacaaaaagaaaaa 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no148_m03.g1 MSMg01no148_m03.g1 CHROMAT_FILE:
MSMg01no148_m03.g1 PHD_FILE: MSMg01no148_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:46 2005
(498 letters)
>mm_chr6_119707163_119708060
Length = 898
Score = 909 bits (470), Expect = 0.0
Identities = 491/498 (98%)
Strand = Plus / Minus
Query: 1 ctcatagaacattgcatttagttttggttttcctctggtatcagtttttttcttataaaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctcatagagcattgcatttagttttggttttcctctggtatcagtttttttcttataaaa 685
Query: 61 atcaggtagagagaagacatctttgcataatatattttatttctaacttaataaatgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atcaggtagagagaagacatctttgcataatatattttatttctaacttaataaatgtga 625
Query: 121 tgattagaaaggttgttttaaggaataaaattttttgagaataactaatttaaaaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgattagaaaggttgttttaaggaataaaattttttgagaataactaatttaaaaatatt 565
Query: 181 tgtattttaattcacctgtgttagactttctgtttagaataagtgcttgttcaatagata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtattttaattcacctgtgttagactttctgtttagaataagtgcttgttcaatagata 505
Query: 241 atcacaattttttttctcaagccaaaattggatgcatgcttaaataggtacttactgaat 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atcacaaatttttttctcaagccaaaattggatgcatgcttaaataggtacttactgaat 445
Query: 301 tttttctgtaacaggtagagtatatatagaaagtccgtgggccaccagggaggcttgcct 360
||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||
Sbjct: 444 tttttctgtaacaggtagaatatatataaaaagtccgtgggggaccagggaggcttgcct 385
Query: 361 ctgaacctggcaacctgagttggatctctggaacccgtatggtagaaggaaagaactcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgaacctggcaacctgagttggatctctggaacccgtatggtagaaggaaagaactcag 325
Query: 421 tctagcaagctgccctctgttctccatagttacaccatggcataagtgtacccagacacc 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctagcaagctgtcctctgttctccatagttacaccatggcataagtgtacccagacacc 265
Query: 481 cacataataaataaatta 498
||||||||||||||||||
Sbjct: 264 cacataataaataaatta 247
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
