Query= MSMg01no149_b08.b1 MSMg01no149_b08.b1 CHROMAT_FILE:
MSMg01no149_b08.b1 PHD_FILE: MSMg01no149_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:13 2005
(652 letters)
>mm_chr6_98804453_98805504
Length = 1052
Score = 969 bits (501), Expect = 0.0
Identities = 511/515 (99%), Gaps = 2/515 (0%)
Strand = Plus / Minus
Query: 135 tgtgtgtgtgtgtgtgtgtgcttttgtgaatttatgtgcaccataagccatctgcaggtg 194
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 tgtgtgtgtgtgtgtgtgtg--tttgtgaatttatgtgcaccataagccatctgcaggtg 982
Query: 195 tctgtggcagctcccctggaaagggagtaaccgacagttatagtccaccgtgtaggtcct 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tctgtggcagctcccctggaaagggagtaaccgacagttatagtccaccgtgtaggtcct 922
Query: 255 gggaagcaggtccaggtcctatgcaccagcagtgagtgctcttcaccactgagccacctc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gggaagcaggtccaggtcctatgcaccagcagtgagtgctcttcaccactgagccacctc 862
Query: 315 tccagccccctggacttgactctgtttcccgtggcttcatttcttggagatcctccaatc 374
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tccagccccctagacttgactctgtttcccgtggcttcatttcttggagatcctccaatc 802
Query: 375 catgcatacattcgccatgctgatcctagtcttctgagagactctagtgcatctggctcc 434
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catgcacacattcgccatgctgatcctagtcttctgagagactctagtgcatctggctcc 742
Query: 435 atcttcccagcagatatgatttgggaagctgtagtaaaaattctacaggtgtgttatggc 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcttcccagcagatatgatttgggaagctgtagtaaaaattctacaggtgtgttatggc 682
Query: 495 gcacataacctcacaaagggaaaacataggcacatatataaaagaaacgaatacatacat 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcacataacctcacaaagggaaaacataggcacatatataaaagaaacgaatacatacat 622
Query: 555 cttctttaaaaagagaaaaagttatcttccaaggttgccttatgtaggtaatcacgtgat 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttctttaaaaagagaaaaagttatcttccaaggttgccttatgtaggtaatcacgtgat 562
Query: 615 gtgtactaaggagtttttcatcctttattcccccc 649
|||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtactaaggagtttttcatcctttattcccccc 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_b08.g1 MSMg01no149_b08.g1 CHROMAT_FILE:
MSMg01no149_b08.g1 PHD_FILE: MSMg01no149_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:13 2005
(632 letters)
>mm_chr6_98725885_98726915
Length = 1031
Score = 1176 bits (608), Expect = 0.0
Identities = 626/632 (99%), Gaps = 1/632 (0%)
Strand = Plus / Plus
Query: 1 tactggagtgactggaagagagggttcctgttcccagaaatgaatctaagagggtgttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactggagtgactggaagagagggttcctgttcccagaaatgaatctaagagggtgttag 260
Query: 61 cctgaacctaccggggcagcctggtgacaaaccccacacagtaggagaaagacagagacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgaacctaccggggcagcctggtgacaaaccccacacagtaggagaaagacagagacc 320
Query: 121 aactcctgcaacaaactagaaccagagctgaatctaggatcctgccatcctgaagatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactcctgcaacaaactagaaccagagctgaatctaggatcctgccatcctgaagatggc 380
Query: 181 agcttttcaagcattcaggaaataattaggtcccccctcacacactgctttgaatctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttttcaagcattcaggaaataattaggtcccccctcacacactgctttgaatctgat 440
Query: 241 ttatgcatttatgtctctcgccactaacataatttcccctaattcataaaaattccaacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatgcatttatgtctctcgccactaacataatttcccctaattcataaaaattccaacg 500
Query: 301 catggtcttcttccttaatcaatctaatgccggtgaaatttctatttccattcattgcat 360
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 501 catggtcttcttccttaatcaatctaacgctggtgaaatttctatttccattcattgcat 560
Query: 361 aaatatgtgctgaatacatacaactcaaggtaataagatggggaagaggtttacaagaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatatgtgctgaatacatacaactcaaggtaataagatggggaagaggtttacaagaag 620
Query: 421 aagtgtattaggcactatctgtgccccaacataaaaatgtgtcaaataatttgtagaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgtattaggcactatctgtgccccaacataaaaatgtgtcaaataatttgtagaaat 680
Query: 481 caacgaagaacttgctatttctgttttcttttctatagatggggtgcattgcgacttcat 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 caacgaagaacttgctatttctgttttcttttctatagatggggtgcagtgcgacttcat 740
Query: 541 ctgatggcaatgtcttaggccacaactttaacacagtattgaggagtcttgatttggtat 600
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgataacaatgtct-aggccacaactttaacacagtattgaggagtcttgatttggtat 799
Query: 601 cagaggacttggcttaaagccttgatctgtct 632
||||||||||||||||||||||||||||||||
Sbjct: 800 cagaggacttggcttaaagccttgatctgtct 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1031
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1021
Effective search space: 635062
Effective search space used: 635062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
