Query= MSMg01no149_g16.b1 MSMg01no149_g16.b1 CHROMAT_FILE:
MSMg01no149_g16.b1 PHD_FILE: MSMg01no149_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:40 2005
(585 letters)
>mm_chr6_52626589_52627573
Length = 985
Score = 936 bits (484), Expect = 0.0
Identities = 496/500 (99%), Gaps = 2/500 (0%)
Strand = Plus / Minus
Query: 1 gaacatctattttacatgtgatattgaaatcattagaaatgtattctacaaattaatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaacatctattttacatgtgatattgaaatcattagaaatgtattctacaaattaatgtg 440
Query: 61 ctatgttaattttatatcccttaaagattacaactgattctcagtatatttcataacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctatgttaattttatatcccttaaagattacaactgattctcagtatatttcataacaat 380
Query: 121 gttttgaaagattacagagagaatgcataaagctatttatcttttctgaatgcagactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gttttgaaagattacagagagaatgcataaagctatttatcttttctgaatgcagactca 320
Query: 181 aagttaaactactggacatgtgaatgttcactgtttcatatcatacctgagaccctgggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagttaaactactggacatgtgaatgttcactgtttcatatcatacctgagaccctgggt 260
Query: 241 ttgactccaacaccacaaaaatcactggtaacaaaattaaagaaaaataaagaagccttg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 259 ttgactccaacaccacaaaaatcactggtaacaaaattaaagaaaaataaaggagccttg 200
Query: 301 gggctggagagatggctcagtagtcaagagcactgactgctcttcctgaggacccaggtt 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 199 gggctggagagatggctcagtagtcaagagcactgactgttcttcctgaggacccaggtt 140
Query: 361 taattcctagcaccca-aagtggcagcttacaactgcctataaccccagttccagggaat 419
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 taattcctagcacccataa-tggcagcttacaactgcctataaccccagttccagggaat 81
Query: 420 ctgacccctttacacagaaatacatgtaagacaaataccagtgcacataaaataattaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ctgacccctttacacagaaatacatgtaagacaaataccagtgcacataaaataattaat 21
Query: 480 taattttaagaagtaaagca 499
||||||||||||||||||||
Sbjct: 20 taattttaagaagtaaagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_g16.g1 MSMg01no149_g16.g1 CHROMAT_FILE:
MSMg01no149_g16.g1 PHD_FILE: MSMg01no149_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:41 2005
(249 letters)
>mm_chr6_52497198_52497845
Length = 648
Score = 466 bits (241), Expect = e-136
Identities = 247/249 (99%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 1 ttgatttctcaatgtccgaacgcctgtttctccaggagaggtatttattttgtttttaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatttctcaatgtccgaacgcctgtttctccaggagaggtatttattttgtttttaga 260
Query: 61 tagaatttactgtgcaggcagatctgagcacagagctaaaaggtggtgtgttcgttaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaatttactgtgcaggcagatctgagcacagagctaaaaggtggtgtgttcgttaggt 320
Query: 121 aaaggcaccggggttggggaattgcagtaaggaagaactatcctgatggagagaaccgta 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggcaccggggttggggaattgcagcaaggaagaactatcctgatggagagaaccgta 380
Query: 181 agtggaaaggtatgggagtaagggagaaaggacaatgaattcagcatggctgaagcagag 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggaaaggtatgggagtaaggga-aaaggacaatgaattcagcatggctgaagcagag 439
Query: 241 aggagcaga 249
|||||||||
Sbjct: 440 aggagcaga 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space: 153360
Effective search space used: 153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
